Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120083.Seq
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    31   1.3  
05_01_0299 - 2322204-2322734,2324089-2326164                           29   3.0  
04_04_1486 + 33918611-33918955                                         29   5.3  
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150...    28   7.0  
09_02_0208 - 5802370-5802963                                           28   9.3  

>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 282 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 461
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 462 LQQTMP 479
           L++ +P
Sbjct: 320 LEEVLP 325


>05_01_0299 - 2322204-2322734,2324089-2326164
          Length = 868

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 447 VQSVHKQLQPARDVRLQLQDHLQPATLRRVESVARKISA*LHDRSCLEQVLRGYETSKH 271
           +  VH+QL  A++ + Q+Q   +     ++E++AR +S    +R  +E  LR  E   H
Sbjct: 674 LSQVHQQLHHAKEQKDQIQARWRQEEAGKIEAIAR-VSLEKKERDQIETSLRSEENFLH 731


>04_04_1486 + 33918611-33918955
          Length = 114

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 626 PPCFTFISSNTQFFIRHLLPALRCSSPSSRIGGXXXXXXXXXKQMEDWSW 477
           P    F  S+T+F  RH LP L C    +RIG          ++   W W
Sbjct: 53  PSSSHFDQSSTRFLDRHFLPLLLC----ARIGNEDGSRASSSQRWRRWGW 98


>01_01_0176 +
           1507592-1507678,1507803-1507931,1508076-1508252,
           1508630-1508770,1509045-1509233,1509311-1509382,
           1509483-1509537,1509987-1510015,1510182-1510396,
           1510987-1511151,1511262-1511646
          Length = 547

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 529 PPILDEGEEQRNAGRRCRIKNCVFEEMKVKHGGHNN 636
           PP L + E +R   RR R+++   +E   KH GHN+
Sbjct: 452 PPSLHDDEHRR---RRRRLRSEAHDERGAKHPGHNS 484


>09_02_0208 - 5802370-5802963
          Length = 197

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 584 IRHLLPALRCSSPSSRIGGXXXXXXXXXKQMEDWSWHSLLKYTKQLFSLSTNSYSLPE 411
           ++ LLPA     P S I G             D SW++++   +QL    T   S PE
Sbjct: 86  LKLLLPAAVAVPPPSEIAGGGVEPFDAELAYYDSSWNTMIPAEEQLLRPITGYLSWPE 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,078,219
Number of Sequences: 37544
Number of extensions: 339676
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)