Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120056.Seq
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0075 - 558829-560859 127 1e-29
06_01_0668 - 4882174-4884204 127 1e-29
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 66 3e-11
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 33 0.31
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 30 2.2
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690 30 2.2
06_03_0160 + 17366392-17367525,17367856-17368206 29 2.9
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 29 2.9
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 29 2.9
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 29 3.8
03_05_0739 + 27271404-27271988,27272265-27272411 29 3.8
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 28 6.6
01_05_0645 - 23899579-23904483 28 6.6
09_06_0250 - 21855602-21856672 28 8.7
07_01_1040 + 9054441-9056006 28 8.7
04_03_0880 + 20517853-20518203 28 8.7
01_06_0137 + 26855468-26856358 28 8.7
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 28 8.7
>07_01_0075 - 558829-560859
Length = 676
Score = 127 bits (306), Expect = 1e-29
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DYKYLR+QVIDTPGILD P E+RN+IEM ++TALAHLRAA+L+F+D S CG+SI
Sbjct: 208 GHADYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDISGSCGYSIAQ 267
Query: 182 QISLFESIKPLFTSKPLIVVLNK 250
Q +LF SIK LF +KPL++V NK
Sbjct: 268 QAALFHSIKSLFMNKPLVIVCNK 290
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Frame = +3
Query: 528 RDDKPRPPVLPPSVL-AKKEKQAEKENRK--RKLERDIEVELGDD--YVLDLKKNYTEIP 692
RD+K RPP +P +VL A+ A KE +K RKLE+D+E E G Y LKK+Y
Sbjct: 381 RDNKERPPCIPQAVLDARASADAAKEKKKLERKLEKDLENENGGAGVYSASLKKHYLLAD 440
Query: 693 EDERYDVIPEI 725
++ + D++PEI
Sbjct: 441 DEWKEDILPEI 451
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 376 VMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNR 504
++ MST+TE GV VK ACERLL RV KM++KK++ LNR
Sbjct: 330 LLTMSTLTENGVMAVKNAACERLLDQRVEIKMKSKKINDCLNR 372
>06_01_0668 - 4882174-4884204
Length = 676
Score = 127 bits (306), Expect = 1e-29
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DYKYLR+QVIDTPGILD P E+RN+IEM ++TALAHLRAA+L+F+D S CG+SI
Sbjct: 208 GHADYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDISGSCGYSIAQ 267
Query: 182 QISLFESIKPLFTSKPLIVVLNK 250
Q +LF SIK LF +KPL++V NK
Sbjct: 268 QAALFHSIKSLFMNKPLVIVCNK 290
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 376 VMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNR 504
++ MST+TEEGV VK ACERLL RV KM++KK++ LNR
Sbjct: 330 LLTMSTLTEEGVMAVKNAACERLLDQRVEIKMKSKKINDCLNR 372
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Frame = +3
Query: 528 RDDKPRPPVLPPSVL-AKKEKQAEKENRK--RKLERDIEVELGDD--YVLDLKKNYTEIP 692
RD+K RP +P +VL A+ A KE +K RKLE+D+E E G Y LKK+Y
Sbjct: 381 RDNKERPACIPQAVLDARASAAAAKEKKKLERKLEKDLENENGGAGVYSASLKKHYLLAD 440
Query: 693 EDERYDVIPEI 725
++ + D++PEI
Sbjct: 441 DEWKEDILPEI 451
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/83 (40%), Positives = 48/83 (57%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH + R+QV DTPG+L +ERN IE + L+HL A+LY D SE CG S+ D
Sbjct: 284 GHIVSNHERFQVTDTPGLLTRDDDERNNIEKLTLAVLSHLPIAVLYVHDLSEDCGTSVAD 343
Query: 182 QISLFESIKPLFTSKPLIVVLNK 250
Q ++ IK F + + V++K
Sbjct: 344 QYITYKHIKERFGDRLWLDVISK 366
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 567 VLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDER 704
+L ++KQ EKE +RKLERD E EL + + ++ + E E+
Sbjct: 519 LLEHEKKQREKEEEQRKLERDREEELEREREMMRRREHEERKRREK 564
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 261 DHTILFNTTIRGLLVNKGFILSNSDIWSSILW 166
DH L +T +RG L NK +++ DIW++ W
Sbjct: 254 DHQKLIDT-LRGHLANKRYLIVVDDIWNTQAW 284
>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
Length = 411
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 576 KKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEI 725
KK+K+ +K+ +K+K + + L V+ L++ + E+E +V+ +I
Sbjct: 14 KKKKKKKKKKKKKKKKESFALALPSAMVMALRRRRKKKKEEEEEEVVTDI 63
>06_03_0160 + 17366392-17367525,17367856-17368206
Length = 494
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 237 TIRGLLVNKGFILSNSDIWSSILW 166
TIR L NK ++L D+WS+ +W
Sbjct: 271 TIRSYLENKRYVLVLDDVWSTNVW 294
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 134 LYFIDPSEQCGHSIEDQISLFESIKPLFTSKPLIV 238
LY+I P + GH+I+D I++ +K T+ P+++
Sbjct: 487 LYYIGPVD--GHNIDDLITILREVKSTKTTGPVLI 519
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 473 RIFSVTRCPSSLSQASILTSCTPSSVTVDIRITGTTDRSEFESALTRFPLEHVS 312
R F + P + +I CT + VD+ ITG E L LE V+
Sbjct: 116 RRFFQSHWPEQAVEEAIKAYCTIEGIPVDVLITGVAQNRAIEGDLVAMTLEPVA 169
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 549 PVLPPSVLAKKEKQAEKENRKRKLERDIEVE 641
P+L P + A +E+ A++E KRK D+E+E
Sbjct: 273 PMLSPILEASEERPAKQEAHKRKSISDLELE 303
>03_05_0739 + 27271404-27271988,27272265-27272411
Length = 243
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 GHTDYKYLRWQV-IDTPGILDHPLEERNVIEMQAVTALAHLRAAILYF 142
G+ ++ L WQ +D G LD+ I +Q ++ HLR A L+F
Sbjct: 108 GNGEFLILHWQADVDGNGYLDYGEFVAVTIHLQRLSNDNHLRTAFLFF 155
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 440 LSQASILTSCTPSSVTVDIRITGTTDRSEFESALTRFPLEHVSVRSSSNCF 288
LS+ TPS ++ +RI G+ R +TR + VSV SS +
Sbjct: 52 LSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVHSSQQIY 102
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 549 PVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEIW 728
P + P++ K+K A +L ++ ++L + L + KN EI ++E+YD++ +I+
Sbjct: 343 PTIDPNIKFGKQK-AFGPAISEELVNELALKLNN---LKVNKNINEISDNEKYDIVNKIF 398
>09_06_0250 - 21855602-21856672
Length = 356
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -3
Query: 563 GRQHGRARLVVARGRHRHGSRFKMPSTFFVRIFSVTRCPSSLSQASILTSCTPSSVTVDI 384
GRQ+ + G HG F + FVR+ L Q ++++ C + TV +
Sbjct: 189 GRQYALGLVWDVLGSALHGLIFALSELVFVRVLGRRSFHVVLEQQAMVSLCAFAFTTVGL 248
Query: 383 RITG 372
++G
Sbjct: 249 AVSG 252
>07_01_1040 + 9054441-9056006
Length = 521
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 539 LVVARGRHRHGSRFKMPSTFFVRIFSVTRCPSSLSQASILTSC 411
++V G+H G K FV + CP L+ AS+L+SC
Sbjct: 188 IIVCYGKHDRG---KEAFDLFVSMMRHGFCPDELTLASLLSSC 227
>04_03_0880 + 20517853-20518203
Length = 116
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 101 PLAFL*HCVLPMDDPRFQGCLSPAISNICNQ 9
P F+ + +LP DDPR C SP I + Q
Sbjct: 69 PRCFI-YVMLPQDDPRCPQCKSPVILDFLQQ 98
>01_06_0137 + 26855468-26856358
Length = 296
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 540 PRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGD 650
P PP P + KK++ A K N+K + D+ V+L +
Sbjct: 198 PTPPPSPTVLTTKKQQIAAKPNKKCADKLDVAVKLNN 234
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 554 HGRARLVVARGRHRHGSR 501
H R V+ RGRHRHG+R
Sbjct: 327 HVPGRAVLHRGRHRHGAR 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,275,622
Number of Sequences: 37544
Number of extensions: 324495
Number of successful extensions: 1281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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