Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021119X
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492     31   0.83 
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175...    28   4.4  
06_01_0869 - 6616667-6616945,6618006-6619241                           28   4.4  
06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842...    28   5.9  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    27   7.7  

>05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492
          Length = 283

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 225 YQDAYGFRMRCDLVSKEWLLAKLRSDERDTVLIDCRGSNE--YSVSHIRSAVNFSIPTIM 398
           +QDA+  R+RC +V     LA    D R   L   RG++   ++V HI   V  + P   
Sbjct: 4   FQDAHFVRLRCSVVRCSKYLA-AEDDGRGVCLSGQRGAHNTVWAVEHITGDVPGAAPGPY 62

Query: 399 LR-RIAAGKIELSSTVQCK 452
           +R R A G+  +++ +Q K
Sbjct: 63  VRLRGAYGRYLVATDLQAK 81


>10_01_0152 -
           1754113-1754286,1754396-1754551,1755273-1756194,
           1756364-1756414,1757540-1757946,1758918-1759067,
           1759178-1759333,1760175-1761041
          Length = 960

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -1

Query: 384 WKSSQRNGCAIQNTRLSPDNLSIRCLFRLNVTSQGAILSTPGRIAF*IHRHLDSTLFSSV 205
           W+S   + CA+ +  +S   L +  +     +S    +STP      + R +DS +F+ +
Sbjct: 190 WESLFLDECAVNDVEISSQTLKVLTIKNTLFSSDKTTISTPSVTYLKLWRPVDSCVFNDM 249


>06_01_0869 - 6616667-6616945,6618006-6619241
          Length = 504

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 374 ELFHPNNNA*ADSC-WED*VVINSAVQRVEGDDKPLSNPWYIRVVRDGPPRDPDSVHG 544
           ELFH       D   W+   V+ + +    G+ KPL   W++  +   P   P+ + G
Sbjct: 404 ELFHQYMEMNEDGVLWDPTSVLPAGLMTFYGNTKPLDKSWHVMGLGYNPSISPEVIAG 461


>06_03_0528 +
           21782567-21782651,21783355-21783563,21784095-21784232,
           21784520-21784734,21784813-21784967,21785010-21785071,
           21785832-21785834
          Length = 288

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 340 FEPRQSINTVSLSSERNFARSH 275
           F   +++N + LSSERN++R H
Sbjct: 27  FTGLKAVNKIGLSSERNYSRGH 48


>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
            27774929-27775110,27775191-27775368,27775453-27775605,
            27775993-27776232,27776369-27776449,27776485-27776730,
            27777151-27777240,27777536-27777778,27778365-27778529,
            27779017-27779080,27779162-27779286,27779383-27779476,
            27779647-27779714,27779798-27779989,27780618-27780752,
            27780847-27780934,27781014-27781107,27781484-27781547,
            27781657-27781708,27781911-27782014,27782099-27782158,
            27782687-27782770,27782892-27783125,27783442-27783864,
            27784675-27784736,27784867-27785521
          Length = 1700

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 145  SRLHVGIDATGYSKW*KVRVNRRKQCTIKM 234
            +RL VGI   GY  W K+R++ +   T K+
Sbjct: 1335 ARLMVGIHWYGYGNWEKIRLDPKLSLTAKI 1364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,398
Number of Sequences: 37544
Number of extensions: 293105
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)