Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0090
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680     29   4.9  
12_01_0272 + 1985348-1986036,1986142-1988020                           28   8.6  
11_06_0175 + 20926022-20926145,20926285-20926640,20926930-209276...    28   8.6  
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258...    28   8.6  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   8.6  

>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
          Length = 628

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 5   GCRNSARGKPTTATAADGSDAEPREEGGEELDGFLYGI 118
           G RN      +T  +   S  +P E+  +++D F+YGI
Sbjct: 419 GARNEDSRLDSTEASPSRSYVQPSEDRNDQVDNFVYGI 456


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 26  GKPTTATAADGSDAEPREEGGEELDGFL 109
           G+    TAADG D EPR+   E+L  +L
Sbjct: 673 GERLPHTAADGGDGEPRDLWDEKLPKYL 700


>11_06_0175 +
           20926022-20926145,20926285-20926640,20926930-20927671,
           20928012-20928031
          Length = 413

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 435 LESRLRHFQDKFEYIQATNHNMRTVGLPSNNTRC*YQIKRTFNYKDNCRLNQIA 596
           +ESR+RHF+ KF  I+     +   G   ++ R   Q ++   Y D+CR N  A
Sbjct: 116 IESRVRHFRTKFGAIEVM---LTKSGFSWDDNRKMIQCEKQ-QYDDHCRKNNEA 165


>04_04_0973 +
           29825057-29825344,29825447-29825552,29825750-29825845,
           29826335-29826690,29826980-29827721,29828064-29828083
          Length = 535

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 435 LESRLRHFQDKFEYIQATNHNMRTVGLPSNNTRC*YQIKRTFNYKDNCRLNQIA 596
           +ESR+RHF+ KF  I+     +   G   ++ R   Q ++   Y D+CR N  A
Sbjct: 238 IESRVRHFRTKFGAIEVM---LTKSGFSWDDNRKMIQCEKQ-QYDDHCRKNNEA 287


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 435 LESRLRHFQDKFEYIQATNHNMRTVGLPSNNTRC*YQIKRTFNYKDNCRLNQIA 596
           +ESR+RHF+ KF  I+     +   G   ++ R   Q ++   Y D+CR N  A
Sbjct: 102 IESRVRHFRTKFGAIEVM---LTKSGFSWDDNRKMIQCEKQ-QYDDHCRKNNEA 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,746
Number of Sequences: 37544
Number of extensions: 298493
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)