Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0074
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.4
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 30 1.8
05_03_0157 - 9027777-9027862,9028142-9029357 29 2.4
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 29 3.2
05_03_0155 - 9002049-9002134,9002825-9004139 28 5.5
10_08_0618 + 19307658-19308584,19308690-19309082 28 7.3
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 7.3
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 27 9.7
01_06_1125 + 34683184-34684776 27 9.7
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +1
Query: 253 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 432
++ + D KELK +KD + K +D+ K + K V + + + + P
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286
Query: 433 DEFKEIY 453
E+ +Y
Sbjct: 287 SEYHSVY 293
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 352 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 516
S K +KHI ++ + + ++ KYD P D FK + + +A + +C C+ +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427
>05_03_0157 - 9027777-9027862,9028142-9029357
Length = 433
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 59 TQIQCDLPAWLTSCRIPAA 3
T C LP WL SCRIP A
Sbjct: 387 TLTPCLLPPWLASCRIPRA 405
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 53 IQCDLPAWLTSCRIPAA 3
+ C LP WL SC+IP+A
Sbjct: 193 VPCILPPWLESCQIPSA 209
>05_03_0155 - 9002049-9002134,9002825-9004139
Length = 466
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 74 SPRHLTQI--QCDLPAWLTSCRIPAA 3
SP +T I C LP WL S +IPAA
Sbjct: 413 SPWFITSILKSCVLPPWLASSKIPAA 438
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 193 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 297
D DEI E+ +PY+K V+ EG R P G + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 157 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 336
+A + K DN + E L+ K L+ + V+DE D L+ HI+ G + A CT
Sbjct: 88 LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143
Query: 337 DKQ 345
+ +
Sbjct: 144 NPE 146
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 160 AEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKD-GMQTACAKCT 336
+ + T +Y +++ D+IL+ ++ + + CV + + P E+ + D G +
Sbjct: 404 SSQITSRYPSLEEDDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDKGTEVKQGVLP 463
Query: 337 DKQKVSARKIVKHIKQHEADYWEQMKA 417
+ + V+ +K++ + D Q +A
Sbjct: 464 NGELVAVKKLLDSVTAVNQDKQFQSEA 490
>01_06_1125 + 34683184-34684776
Length = 530
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 382 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 474
+ A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,491
Number of Sequences: 37544
Number of extensions: 326182
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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