Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0058
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    69   2e-12
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    68   5e-12
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    65   4e-11
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    53   2e-07
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   2.9  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   8.9  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 37/84 (44%), Positives = 50/84 (59%)
 Frame = +2

Query: 38  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 217
           M LQE F+Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59

Query: 218 WHKLAGTSKEDAQKAYIEIVEGLI 289
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = +2

Query: 38  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 217
           M LQE F++ A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59

Query: 218 WHKLAGTSKEDAQKAYIEIVEGL 286
           W  + G SKE+A   YI  V+ L
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = +2

Query: 38  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 217
           M LQE+F++ A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DA
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59

Query: 218 WHKLAGTSKEDAQKAYIEIVEGLI 289
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +2

Query: 68  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 247
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 248 DAQKAYIEIVEGL 286
           +A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 581 RKGRKLFHCCSILCFSTLEVPFINV 507
           R GRK   CC IL F+   V F+NV
Sbjct: 418 RSGRKKSACCKILFFTIWNVFFVNV 442


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 213 SNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRFFTL 73
           +N ALP K   P      A+P+ A L WA    S+ +V R F F  L
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFFMAL 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,627
Number of Sequences: 37544
Number of extensions: 296243
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)