Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0056
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      247   4e-66
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   1.7  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   2.9  
04_01_0618 - 8094991-8097288                                           28   5.1  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   6.8  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  247 bits (605), Expect = 4e-66
 Identities = 109/160 (68%), Positives = 135/160 (84%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           GDRG  ARASG++A VI HNPD   +R+KLPSGAKK++PS
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPS 160


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 422 LWKLRHCDWT 451
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 453 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 364
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 227 RSIQVQDKEGALHCSRRALHRPICLLW 307
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 315 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 482
           A L+ G   P+G + E   VC L +   D  R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,587
Number of Sequences: 37544
Number of extensions: 319970
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)