Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0049
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 220 6e-58
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 215 3e-56
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 3.0
08_02_0009 + 11216532-11218687,11220727-11225998 28 5.2
08_02_0003 + 11180421-11180757,11180773-11185715 28 5.2
08_02_0002 + 11173365-11173512,11173528-11178470 28 5.2
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 6.9
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 220 bits (538), Expect = 6e-58
Identities = 107/160 (66%), Positives = 126/160 (78%), Gaps = 1/160 (0%)
Frame = +1
Query: 10 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 189
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 190 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 366
RR+ GGVGR AQAK + QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQV
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120
Query: 367 NRAPFLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 486
N+A RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V +
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 215 bits (524), Expect = 3e-56
Identities = 110/180 (61%), Positives = 129/180 (71%), Gaps = 13/180 (7%)
Frame = +1
Query: 10 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 153
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 154 KNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTL 330
++VI K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESNAD K L
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 331 DVDRLVIDHIQVNRAPFLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 510
DVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV + T AP
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 151 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 318
L N++E E R GR A+ Q + RWP ++AE RN E NA+
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456
Query: 319 -NKTLDVDRLVIDHIQ 363
++T++ D DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 367 NRAPFLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD 504
NRAPFL +R R + Y C +C S D ++R P D
Sbjct: 1487 NRAPFLHKRNVRRYNPKKTY-DKTCRCFICNS--PDHLSRTCPNKD 1529
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 367 NRAPFLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD 504
NRAPFL +R R + Y C +C S D ++R P D
Sbjct: 771 NRAPFLHKRNVRRYNPKKTY-DKTCRCFICNS--PDHLSRTCPNKD 813
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 367 NRAPFLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD 504
NRAPFL +R R + Y C +C S D ++R P D
Sbjct: 708 NRAPFLHKRNVRRYNPKKTY-DKTCRCFICNS--PDHLSRTCPNKD 750
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 7 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIP 186
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 187 FRRFN 201
F+
Sbjct: 590 VLHFS 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,060
Number of Sequences: 37544
Number of extensions: 340070
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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