Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0046
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024 118 3e-27
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263... 115 4e-26
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333... 48 7e-06
12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097 29 3.6
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 3.6
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505... 29 3.6
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711... 29 4.7
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 4.7
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243... 28 8.3
>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
Length = 143
Score = 118 bits (285), Expect = 3e-27
Identities = 53/98 (54%), Positives = 69/98 (70%)
Frame = +1
Query: 406 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 585
R TN+ + LAS+++ + A++ QLSP P GI+ L A F L CFQ+LTG KF V +T
Sbjct: 29 RTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCET 88
Query: 586 NMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFD 699
Q + +LK IYELY+D+ LKNPFY +EMPIRCELFD
Sbjct: 89 GAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFD 126
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 109 IYGIYIVSKSGGLIYNYDH 165
IY ++I++KSGGLIY D+
Sbjct: 6 IYSLFIINKSGGLIYYKDY 24
>06_01_0367 -
2636487-2636498,2636655-2636724,2636831-2636937,
2637208-2637226,2637383-2637470,2638175-2638303,
2638428-2638506,2639658-2639720,2640437-2640535,
2641583-2641740,2642926-2643094,2643174-2643239
Length = 352
Score = 115 bits (276), Expect = 4e-26
Identities = 52/98 (53%), Positives = 68/98 (69%)
Frame = +1
Query: 406 RATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDT 585
R TN+ + LAS+++ + A++ QLSP GI+ L A F L CFQ+LTG KF V +T
Sbjct: 29 RTDTNDSLRLASLWHSMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCET 88
Query: 586 NMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFD 699
Q + +LK IYELY+D+ LKNPFY +EMPIRCELFD
Sbjct: 89 GAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFD 126
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 109 IYGIYIVSKSGGLIYNYDH 165
IY ++I++KSGGLIY D+
Sbjct: 6 IYSLFIINKSGGLIYYKDY 24
>01_05_0102 -
18131640-18131655,18132928-18133046,18133186-18133300,
18134072-18134325
Length = 167
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 508 SLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIR 684
S +T+KL+ ++ +G+K I++T LK IY LY +Y +KNP Y+ PI+
Sbjct: 105 SFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLYVEYVVKNPLYAPGTPIK 163
>12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097
Length = 371
Score = 29.1 bits (62), Expect = 3.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 336 VFRCSSCHWRSIY 298
+FRCS+CHW +Y
Sbjct: 248 LFRCSTCHWSRVY 260
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 289 IHVQHLFHLFGQMPQQLFYFHTAI 218
+H+++ HLF +MP F F TA+
Sbjct: 51 LHLRYALHLFDRMPASTFLFDTAL 74
>02_01_0680 +
5054306-5056411,5057200-5057243,5057549-5057664,
5057942-5058036
Length = 786
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 289 IHVQHLFHLFGQMPQQLFYFHTAI 218
+H+++ HLF +MP F F TA+
Sbjct: 51 LHLRYALHLFDRMPPSTFLFDTAL 74
>11_06_0370 +
22768977-22769523,22769619-22770642,22770784-22771170,
22771216-22771507
Length = 749
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 523 TFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKR 618
+ +LS F + +KF+ + DT T V+LKR
Sbjct: 382 SMRLSMFNDFSKLKFLAIADTRFASTIVMLKR 413
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -2
Query: 320 PVTGDPF----TDSNTCPTFIPSLWPNATTTFLFSYCNLISRGNPNV 192
PV G PF + SNT T + S +P +Y N++++ PN+
Sbjct: 175 PVMGSPFPVFFSASNTAATVVTSTFPPTLPAVSSAYPNMVNQTMPNM 221
>10_07_0105 +
12922828-12923448,12923554-12923907,12924008-12924330,
12928324-12928401,12928760-12928883
Length = 499
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 232 NKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGR 402
+K + V G++ G +P+ G TT RD D+I +E S ++GR
Sbjct: 81 DKTLAVHAGEKLGSGAAAAETDSIATPIVGGTTHWFRDSADLIAFREGRRRSFEYGR 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,140
Number of Sequences: 37544
Number of extensions: 335719
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -