Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     28   5.3  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   5.3  
11_01_0228 + 1768318-1769871                                           27   9.3  
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    27   9.3  

>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 259 SRYKFQDLSIATT-ATPPFEPKRIIAIERF*LSQVGINESR 140
           +RYKF   + ATT AT   +P RI+A+ +     VGI E+R
Sbjct: 141 ARYKFDAAAAATTPATATVDP-RILALYKDITELVGIEEAR 180


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 177 LSIAIMRFGSKGGVAVVAILRSWNLYLEVGGAFTL*MSMGSSNHLTPG 320
           ++I + + G  G + V+   R   + L +GG     ++MG + HL  G
Sbjct: 348 INIKLAKLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>11_01_0228 + 1768318-1769871
          Length = 517

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 223 TATPPFEPKRIIAIERF*LSQVGINESRRLYIYIFLDIKSCS 98
           T T P EP R  A+         + ES RLY    +D +SC+
Sbjct: 348 TGTRPGEPFRFDALREMHYLHAALTESMRLYPPAPIDSQSCA 389


>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
            161530-161675,161918-161965,162054-162203,165647-165706,
            165788-165859,165960-166409,166640-166839,167239-168236,
            168676-168683,169057-169230,169341-169659,169748-169824,
            169897-169966,170040-170111,170204-170418,170540-170665,
            170751-171046,171133-171157,171163-171303,171400-171498,
            171571-171702,171793-171912
          Length = 1407

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 427  IHFYALDNSNEKIIAI*QNDALIRTH 504
            I F+ LDNS  ++I I  N+   RTH
Sbjct: 1098 ISFHCLDNSPVQVIGINNNEGTSRTH 1123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,378
Number of Sequences: 37544
Number of extensions: 316398
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)