Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0041
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0411 - 18730224-18730574                                         33   0.30 
02_03_0018 - 13978247-13978717                                         29   3.6  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   6.4  
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    28   8.4  

>12_02_0411 - 18730224-18730574
          Length = 116

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 371 ATLPLAGLDCPPGCGTPGCANT 306
           AT+PL    CPP CGTP   +T
Sbjct: 8   ATVPLLASACPPACGTPALGST 29


>02_03_0018 - 13978247-13978717
          Length = 156

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 568 GTGCHG-DSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGV 392
           GT  HG  +CS P+   L  WE   +L     E   +   +CA++     E++   L GV
Sbjct: 6   GTAVHGLPACSTPA---LTWWEATVILCGGVTEITRQ--EECARIGGHAGEQSGDRLRGV 60

Query: 391 LQRGSQWLRCLWRD 350
              G  W R   R+
Sbjct: 61  DGGGGVWGRARGRE 74


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 375 CEPRCRTPPRCAEFSSSREQLSWA 446
           C PR   PPRC  + +S   L W+
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVLIWS 374


>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 565 TGCHGDSCSEPSEPCLQIWEPWKVL 491
           T   G+S SEP+ PC  ++E W VL
Sbjct: 123 TSVFGESESEPN-PCFPVYEKWTVL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,603,365
Number of Sequences: 37544
Number of extensions: 424551
Number of successful extensions: 1057
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)