Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0036
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0849 - 11768191-11771412 31 0.42
01_06_0388 + 28927211-28928467 31 0.55
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 30 0.96
05_03_0334 - 12550621-12550722,12552038-12552226 29 1.3
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 29 1.7
08_02_0999 + 23418295-23418615 25 1.9
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 28 2.9
01_06_0389 - 28932228-28932365,28932967-28934184 28 2.9
10_01_0159 - 1807806-1809386 28 3.9
09_04_0377 + 17086775-17088310 28 3.9
06_01_0380 + 2731792-2732097 28 3.9
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 27 5.1
03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166... 27 6.8
12_01_0002 - 4477-6144,6571-7440 27 9.0
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 27 9.0
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 27 9.0
11_01_0003 - 6099-7766,8193-9062 27 9.0
09_04_0039 + 14023383-14023727 27 9.0
06_03_0871 - 25562767-25563509,25563889-25565776 27 9.0
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 27 9.0
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 27 9.0
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 437 LLVSHCVPRLPAVDELREDVSVLERESPEDVVSLPGLQQI 318
L +SHC PRL V L +++ LE + + SLPGLQ +
Sbjct: 861 LYISHC-PRLQNVTNLPRELAKLEINNCGMLCSLPGLQHL 899
>01_06_0388 + 28927211-28928467
Length = 418
Score = 30.7 bits (66), Expect = 0.55
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 422
APG S+ V+A G+L E +R Y +G L SL GDV + + G G A
Sbjct: 86 APGGSLADVVARSGGRLDECAIRAYAADVARGLAYLHGMSLVHGDVKGRNVVVGADGRA 144
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 29.9 bits (64), Expect = 0.96
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 108 VMLVMTSRVSEARSTGAP--LSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVV 281
++LV+ + V + T A L A R++ H A + + + A+ + PGD V++
Sbjct: 116 LILVVNAAVGVWQETNAEKALEALREIQSDHAAVLRDGD--WLPSLPARDLVPGDIVQLR 173
Query: 282 IAGKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHD 443
+ K+P D +R L + T +E G + + + K + V H D
Sbjct: 174 VGDKVPAD-MRVLRL-------VTSTLRVEQGSLTGETASVNKTAHQVPHDDAD 219
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 171 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLP-EDTLRGY 320
CR PQ + P P A DSV+VV+ LP E+ LR +
Sbjct: 6 CRIWWPQRRLQPEPLPAPQRFVLFGWLFARTDSVDVVVGAALPQEEILRSF 56
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 144 RSTGAPLSACRDMMPQHNA--TAQTSPPPYTITTDAQSVA 257
R+ P + C + P H+ +A + PPP +I+ A++VA
Sbjct: 18 RNHATPAATCAALAPAHHGHLSASSPPPPSSISAAARAVA 57
>08_02_0999 + 23418295-23418615
Length = 106
Score = 24.6 bits (51), Expect(2) = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 198 ATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKL 296
ATA P T TTD++ APG+S + GK+
Sbjct: 73 ATAVQGSMPMT-TTDSRPTAPGNSPGIGNKGKI 104
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 78 KVYACLCAAVVMLVMTSRVSEARSTGAPLSACRD 179
KV C C + ++V+ S +EAR A + D
Sbjct: 5 KVVFCTCILIFIVVVISGQAEARRLAAVANGNED 38
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 413 RLPAVDELREDVSVLERESPEDVVSLPGL 327
RL ++ LR D + L + PEDV LPGL
Sbjct: 146 RLTELNYLRLDKNNLSGQIPEDVAKLPGL 174
>01_06_0389 - 28932228-28932365,28932967-28934184
Length = 451
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 422
APG S+ A G LPE +R Y +G L SL GDV ++ + G G A
Sbjct: 82 APGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRA 140
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 422
APG S+ V+A G+L E +R Y +G D L + GDV + G G A
Sbjct: 92 APGGSLADVVARNGGRLDEGAVRTYAADVLRGLDYLHGKLVVHGDVKGSNVLVGADGRA 150
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 99 AAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD 242
A+VV L SRVS + S S R P+ N SP PY D
Sbjct: 9 ASVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRD 56
>06_01_0380 + 2731792-2732097
Length = 101
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 313 RKVSSGSLPAITTSTLSPGATLCASVVMV*GGGEVCAVA 197
R ++ L A+ + ++P AT CA V GGE+ A A
Sbjct: 9 RVAAAAVLLALLVAVVAPPATTCADAARVLLGGELAAAA 47
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 255 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 422
APG S+ +A G+L ED +R Y G L + GDV + + G G A
Sbjct: 92 APGGSLADEVARNGGRLEEDDVRAYAADVASGLAYLHGVGMVHGDVKGRNVVIGANGRA 150
>03_06_0573 -
34815576-34815785,34816117-34816327,34816448-34816623,
34816701-34816882,34817431-34817580,34817654-34817894
Length = 389
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 437 LLVSHCVPRLPAVDELREDVSVLERESPEDV---VSLPGLQQISAQGVL 300
LL + P VDE+ E+ LE SPED+ V+ L++++ GV+
Sbjct: 267 LLSADATVSYPNVDEMNEESENLELTSPEDLGVQVASMLLEEVAQGGVV 315
>12_01_0002 - 4477-6144,6571-7440
Length = 845
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 171 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPED 305
C D++ Q + A PP ++ A S A V+V+ A +D
Sbjct: 415 CLDLLLQGSHPAPQRPPKLLLSVSAHSDAAASQVKVIPAATTKDD 459
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 201 TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQGDDILGTFSLEDGD 380
T S P T+ + Q+ + G +E+V AG G L + +LG + G+
Sbjct: 17 TTDDSSSPMTVEKEEQAASTG--MEIVKAGNSNAQETGGLSLNYEEARALLGRLEFQKGN 74
Query: 381 VFSQL 395
V + L
Sbjct: 75 VEAAL 79
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 416 PRLPAVDELREDVSVLERESPEDVVSLPG 330
P PA+D++ + + + ++ PEDVV L G
Sbjct: 83 PSPPAIDDVLDVLPIAGQDIPEDVVPLIG 111
>11_01_0003 - 6099-7766,8193-9062
Length = 845
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 171 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPED 305
C D++ Q + A PP ++ A S A V+V+ A +D
Sbjct: 415 CLDLLLQGSHPAPQRPPKLLLSVSAHSDAAASQVKVIPAATTKDD 459
>09_04_0039 + 14023383-14023727
Length = 114
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 132 VSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGD 266
+ E + GAP +A D M + +T PP + D Q P D
Sbjct: 4 IGEVIAGGAPRAAANDAMVETRLGMETHTPPRFLHHDLQRRLPCD 48
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 153 GAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 317
GA S C +A A +PPPY +++ P +V G + + L G
Sbjct: 729 GAGASPCGSSSAATSAAAAAAPPPYQAPECLKNLRPNTKWDVYSFGMVLLELLSG 783
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 348 CRLPAGPAANIRARCPLAAYLRSPPPR 268
C PA PA+ + A P A+ R PP R
Sbjct: 119 CEGPAPPASIVTAPPPPVAFRRKPPAR 145
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 342 LPAGPAANIRARCPLAAYLRSPPP 271
LPA PAA++ R P SPPP
Sbjct: 85 LPAAPAADLPPRPPSDPVAASPPP 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,446
Number of Sequences: 37544
Number of extensions: 193707
Number of successful extensions: 1004
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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