Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D06
(255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539 28 1.2
11_01_0308 + 2307623-2307697,2308554-2308790,2310109-2310282 27 2.1
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066... 27 2.8
09_02_0338 + 7426999-7428322,7428390-7428646 26 3.6
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 26 3.6
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 26 4.8
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 26 4.8
03_06_0682 - 35516081-35518303 26 4.8
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 26 4.8
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 25 6.4
04_04_1419 - 33433463-33436009 25 6.4
11_04_0310 + 16218439-16219383 25 8.4
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 25 8.4
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 25 8.4
>01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539
Length = 238
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 244 RLRLDRYRCRPQCNFRTRTARILTSRSRNQGEHSISRN 131
R R+ R R P+C +R TAR + ++ EH N
Sbjct: 27 RRRVARVRLAPRCQWRPLTARAQAAATQPDPEHQAPAN 64
>11_01_0308 + 2307623-2307697,2308554-2308790,2310109-2310282
Length = 161
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 99 SEVLHMPRILRLREMLCSPWFRL 167
S +LH R+ R+R+ML P +RL
Sbjct: 117 SMILHQDRLRRVRQMLTRPRYRL 139
>02_03_0415 +
18805541-18805610,18805962-18806128,18806616-18806645,
18807459-18807515,18808268-18808337,18808915-18810998
Length = 825
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 217 RPQCNFRTRTARILTSRSRNQGEH 146
RP+ NF + + L S+SR+ G+H
Sbjct: 446 RPKANFAPTSMKDLPSKSRSSGDH 469
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 22 RNEMSKFTILAVLLGLVALTYVNGNKVKSYICQ 120
RN M +LA LGLV L +KSY C+
Sbjct: 411 RNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 115 CQGYYGCEKCCVHLGSGCEKLKS 183
C+ Y GC K C + GC KS
Sbjct: 473 CEKYCGCSKSCKNRFRGCHCAKS 495
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 115 CQGYYGCEKCCVHLGSGCEKLKS 183
C+ Y GC K C + GC KS
Sbjct: 670 CEKYCGCPKMCKNRFRGCHCAKS 692
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 187 PFWFGSYTEVCT-CTCPDGVDP 249
PF + +T V C CPDG +P
Sbjct: 378 PFGYCDFTSVIPRCQCPDGFEP 399
>03_06_0682 - 35516081-35518303
Length = 740
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 163 GCEKLKSSPFWFGSYTEVCTCTC 231
GCE+LKS P G T + T TC
Sbjct: 653 GCERLKSMPPNLGHLTCLQTLTC 675
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 151 HLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDP 249
+LG CEKL SP SY P VDP
Sbjct: 1215 YLGKLCEKLGHSPAEAFSYYNKAVVLNPTAVDP 1247
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 22 RNEMSKFTILAVLLGLVALTYVNGNKVKSY-ICQGYYGCEKCC 147
R + +T LAVL G +G VKS + +G GC++CC
Sbjct: 329 RGATAAYTCLAVLDG-------HGGAVKSLALARGGAGCDRCC 364
>04_04_1419 - 33433463-33436009
Length = 848
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 202 SYTEVCTCTCPDGVDPY 252
+Y++ TC+CPDG P+
Sbjct: 302 TYSQGPTCSCPDGYVPH 318
>11_04_0310 + 16218439-16219383
Length = 314
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 226 YRCRPQCNFRTRTARILTSRSRNQGEHSI 140
Y CRP+C+ + A L +R++ GE +
Sbjct: 113 YTCRPRCDIAAKLAE-LKNRAQQVGERRL 140
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 42 HNPGCFTGPRSLDLRQR**SEVLHMPR 122
H+PGC GP+ D +R +++ PR
Sbjct: 674 HSPGCPVGPQVFDRLERKYNKISAWPR 700
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Frame = +1
Query: 163 GCEKLKSSPFWFGSY----TEVCTCTCP 234
GC +L++ P W G Y E+ TCP
Sbjct: 1091 GCGELETLPEWLGDYFTCLEEISIDTCP 1118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,048,614
Number of Sequences: 37544
Number of extensions: 130245
Number of successful extensions: 371
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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