Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C18
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    30   1.9  
10_08_0284 + 16479761-16479812,16479976-16480085,16480299-16480829     29   3.4  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   3.4  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   3.4  
03_06_0047 + 31266940-31268394                                         29   4.5  
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     28   7.8  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   7.8  

>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = +3

Query: 252 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 407
           + D  V   +Y P  GT     P K S+E   +P+   +       EM  +   Q + + 
Sbjct: 35  QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94

Query: 408 DIQPCICTREIKQVCGSDG 464
            + P   T  I QV G+DG
Sbjct: 95  TVHPNTTTSVILQVVGNDG 113


>10_08_0284 + 16479761-16479812,16479976-16480085,16480299-16480829
          Length = 230

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 620 TVHCCINDNNLIGFRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVS 468
           T+H CI +   +    V HNL + + RT  +D        GAI    +  S
Sbjct: 19  TIHMCIEEQVAMFLHTVGHNLRNRLVRTN-YDRSGETDCIGAIDGTHIRAS 68


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 56  YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 223
           Y  ++S R  AN   ++N  A+  RV+      +R  + DLP    L++REG +  RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 418 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 302
           G  S TLTSW+S   F + +G     H    ++G   PS
Sbjct: 31  GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 132 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 278
           R +   C  D  TY     ++CE DK    LK+ K    ++  P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416


>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -3

Query: 581 FRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVSDAVATANLFDLPRADTWLYIGN 402
           F ++ H +H +V       A    R   A+Q +RVAV  AV     F     +   ++G+
Sbjct: 306 FPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGS 365

Query: 401 --FNFLAFA--AMFHL 366
                L+F   A+FHL
Sbjct: 366 TVCALLSFVLPALFHL 381


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 436 SRVQIHGCISATLTSWHS 383
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,264
Number of Sequences: 37544
Number of extensions: 421780
Number of successful extensions: 1272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)