Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_C16
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 29 3.3
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 29 3.3
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 29 4.3
07_03_1448 - 26593041-26593266,26593417-26593442,26593906-265939... 28 5.7
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 7.5
10_02_0136 + 5719136-5719780,5719923-5720237 27 9.9
06_03_0846 - 25328224-25330613,25330716-25330794 27 9.9
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 265 DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 390
+ ++Y+D L+GG E +G++ S+ H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 264 HMVILDASNSSGARIVRQALWS 199
HM ILD N G ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 456 RFQCVDLFCCWLVGVVIS 403
R+ CVD CCWLVG V S
Sbjct: 63 RWSCVDS-CCWLVGCVCS 79
>07_03_1448 -
26593041-26593266,26593417-26593442,26593906-26593990,
26594098-26594229,26594307-26594450,26594524-26594582,
26594651-26594957,26595482-26595563,26595640-26595773,
26595858-26595951,26596022-26596145,26596407-26596466
Length = 490
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 162 VQIFHVNWSQAV-PIIFANNTAVRVNLCKVYDKQDINKTKKHIHPTNSYITS 10
VQ+ H N+ QAV II + +TA+ + L D++K + PT +++ +
Sbjct: 420 VQLIHTNYLQAVSKIIASKSTAISITLQGKSSTDDLSK----LQPTQAHVVN 467
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 82 AKVNADCGIVSKDDW-DGLTPVHVEYL 159
A + DC I+S+ +W D LT + V YL
Sbjct: 530 ANLGMDCAIISEGEWADTLTDISVGYL 556
>10_02_0136 + 5719136-5719780,5719923-5720237
Length = 319
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 603 AVNIFEPFGPPSDYVIKFSTRAISGH 526
AV+I EPFG YV ++ R + GH
Sbjct: 152 AVDIPEPFGRRPAYVSNWAMRCVDGH 177
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 562 IIRRWPEWLENVDSYKE 612
II+RW W VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,368
Number of Sequences: 37544
Number of extensions: 425855
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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