Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C05
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 31 1.2
03_05_0576 + 25765137-25766420 31 1.2
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 31 1.6
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 29 4.9
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 29 4.9
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 29 6.5
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.6
04_03_1017 + 21747044-21748051 28 8.6
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 608 VESVRAHLADRLLKRLAPADCLEVRSLXDLSPHHLAQLD--AYIAQHFEXVCXTGAMAAL 781
+E + A LAD LL+RLA A L SL ++ H + ++D +IA E + GA L
Sbjct: 44 LERLPAQLADALLRRLA-ARRLLFPSLLEVFQHSVEEIDLSGHIAVDAEWLAYLGAFRYL 102
Query: 782 PVVRI 796
V+++
Sbjct: 103 RVLKL 107
>03_05_0576 + 25765137-25766420
Length = 427
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 785 QAGLPSLLXRIPXRNAAQYKRPAVPNDGAKDRXETE-PPDNLPEPIASTNGPPGEP*P 615
Q G P+ L + +N + K+P+ K R E PP P P S P P P
Sbjct: 31 QTGFPTSLADLVVKNHGRLKKPSASASRRKKRGGPEAPPSPSPSPSPSPPPQPSSPPP 88
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 694 IGKRPNL-QTICRSQSLQQTVRQVSPDRLDTQPP 596
+G +P++ QTI + +LQ T +QVSP L Q P
Sbjct: 437 LGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQP 470
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +1
Query: 442 PRDHITSTGFRSCVPXXXXXXXXLEGTCGIRLHRSSSGQRYA---LGPEIVSCRLEAACR 612
PR + + R C L+G CG + S Q + L P+ C+ E AC
Sbjct: 337 PRGYYKCSSVRGCPARKHVERSGLQGECGKATDKRSDRQPFVSVLLCPKSKPCKSEMACF 396
Query: 613 VGQGSPGG 636
+ SP G
Sbjct: 397 LVATSPLG 404
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 293 PARALSALNALRKSRQHYDAVLVA 364
P RA ++N L K R+H DAV VA
Sbjct: 628 PDRATESINRLMKRREHIDAVKVA 651
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 752 PXRNAAQYKRPAVPNDGA-KDRXETEPPDNLPEPIASTNGPPGE----P*PTRHAASRRH 588
P R+++Q +RP + DGA K R ++P ++ + N PG RHAA++R
Sbjct: 401 PKRSSSQPRRPIISADGADKRRPASQPRASVSGKV--LNKQPGSETEAAEKNRHAAAKRF 458
Query: 587 DT 582
D+
Sbjct: 459 DS 460
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 686 ETEPPDNLPEPIASTNGPPGEP*PTRHAASRRHDTISGPRAYL*P 552
++ PP LP P +T PP P P RRH I P L P
Sbjct: 55 DSPPPPPLPTPTVTTPTPP--PPPPAPRPPRRHHRIPPPPPPLLP 97
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.3 bits (60), Expect = 8.6
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Frame = -1
Query: 842 PPXGSLPESAXPSTVXCGRQAGLPSLLXRIPXRNAAQ--YKRPAVPNDGAKD--RXETEP 675
PP + PST R+A P P R AA Y + P A T P
Sbjct: 212 PPRRAASPDYSPSTPP--RRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDYTPSTPP 269
Query: 674 PDNLPEPIASTNGPPGEP*PTRHAASRRHDTISGPRAY 561
P P + + PP P P ++ T+ PR Y
Sbjct: 270 PPRAASPDYTPSTPPSSPLP----SAAESFTVPPPRRY 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,434,276
Number of Sequences: 37544
Number of extensions: 483617
Number of successful extensions: 1390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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