Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C03
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.67
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.6
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.7
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 29 4.7
06_03_1448 + 30235336-30236763 29 6.2
06_03_1443 + 30182018-30183445 29 6.2
06_03_1440 + 30166515-30167942 29 6.2
06_03_1437 + 30151030-30152457 29 6.2
06_03_1429 + 30100834-30102261 29 6.2
06_03_1425 + 30084383-30085810 29 6.2
06_03_1420 - 30053713-30055140 29 6.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.2
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 6.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.3
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 476 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 354
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>10_08_0141 + 15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 550 SVLAELALGHLRYSLTGVPPQSNSPPGSVLEPDHAGVLNGDER 422
++ A L G +R +L GV PQ PP A V+ GD+R
Sbjct: 993 AIQARLHDGVIRVTLPGVKPQQQPPPAKTAAA--AAVVGGDQR 1033
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 376 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 555
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 556 RVEQKGK 576
RV+ G+
Sbjct: 114 RVDNGGR 120
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 316 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 176
+ +GFS TI R+D ++ L P G+ PA P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 481 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 344
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 409 TTLHAWNETPCARRYY 362
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 643 YKEFLARG-ARKVTTGITGLWQPSVHXDVAF*SFDVG 750
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 496 PPQSNSPPGSVLEPDHAGVLNGDE 425
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,514,553
Number of Sequences: 37544
Number of extensions: 520188
Number of successful extensions: 1532
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -