Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B19
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   120   2e-27
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   119   3e-27
01_05_0125 - 18382402-18382761,18382863-18383036                       29   3.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  120 bits (288), Expect = 2e-27
 Identities = 51/73 (69%), Positives = 65/73 (89%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQ 108

Query: 360 HMSEDCRRRFYKN 398
           H+SE+ RRRFYKN
Sbjct: 109 HLSEEVRRRFYKN 121



 Score = 78.2 bits (184), Expect = 8e-15
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFV 47


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  119 bits (287), Expect = 3e-27
 Identities = 51/73 (69%), Positives = 65/73 (89%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQ 108

Query: 360 HMSEDCRRRFYKN 398
           H+SE+ RRRFYKN
Sbjct: 109 HLSEEVRRRFYKN 121



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFV 47


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 411 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 280
           R+  S    ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 38  RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,628
Number of Sequences: 37544
Number of extensions: 380324
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)