Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40077
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   9e-13
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                52   4e-07
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.069
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           28   7.9  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +2

Query: 95  VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
           V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA+
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAK 808



 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 28/38 (73%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 366
           Y +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 810 YGISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 5/43 (11%)
 Frame = +3

Query: 501 HQKDIRC-----KDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 614
           H+++I C     KDD  THLYTLIV+PDNTYEV IDNEKVESG
Sbjct: 835 HEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESG 877


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
 Frame = +1

Query: 376 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKISAAKM-------- 528
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++  A K         
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86

Query: 529 --MSTHICTL*L*NLTTPMKSSLTMRKLNLGDLEADWGLP-SA*RKSRDPESPGNPKTWG 699
               TH+ TL +       +  +    +N G L  D   P +   +  DP+    P+ W 
Sbjct: 87  DGKKTHLFTL-VVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDK-RPEDWD 144

Query: 700 *QSPLFPDPEGQEA*XIWDKLYPIFFPD 783
            +    PDP+ ++    WD+  P+  PD
Sbjct: 145 -EREKIPDPDAEKP-DDWDEDAPVKIPD 170



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 525 DDVYTHLYTLIVKPDNTYEVLIDNEKVESG 614
           D   THL+TL+V+PDNT+EV ID E V  G
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQESVNKG 116


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 353 PPQSMSCSCLTVNWTTKGLPSLLNG 279
           P +  SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 236 TSEDARSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 364
           T+ DAR M  P +S     R++P  SSS S+ + + + + DT+
Sbjct: 191 TAADAREMADPATSTPWTFRMSPASSSSSSSSSSSSSSQEDTT 233


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 521 AADIFLMRWFLPL*LKITCTFLVPGPQMSGPNIISYGV 408
           AAD   +RW   L  +IT   +V G + SGP I+  GV
Sbjct: 567 AADFSFVRWVQSLAERITSRVVVEGQKRSGP-IVDLGV 603


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 157 VLTVHPIAFPRIIRKLLLKEYI 92
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 92   DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARSMLSPV 271
            +VF   +  D +  + +++ E  G   G   L AG     P   +G    ED+ SM   +
Sbjct: 950  EVFTIGQVYDHTTPTAYIFHEWDGDALGGAPLRAGATEVYPRGSRGNTMGEDSSSMYVTL 1009

Query: 272  SSN 280
            SSN
Sbjct: 1010 SSN 1012


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,126,194
Number of Sequences: 59808
Number of extensions: 668842
Number of successful extensions: 2210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)