Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)                      32   0.69 
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   4.9  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)
          Length = 476

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 565 CHVKCCGFNSHLGKCSCNKQKCG 633
           C   C G   H+ KC+C+K KCG
Sbjct: 199 CETSCDG-GKHIDKCTCDKSKCG 220


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 565 CHVKCCGFNSHLGKCSCNKQKCGIVCSGC 651
           C V CC    H+ KCS     C +VCS C
Sbjct: 258 CRVACCSCRVHM-KCS----SCRVVCSSC 281


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 94   CCADFLSFNCDFILSKCSLSIC 29
            C  DF  FNC+  ++ CS S C
Sbjct: 1792 CALDFTGFNCEIRVNNCSSSPC 1813


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,063,144
Number of Sequences: 59808
Number of extensions: 523472
Number of successful extensions: 1432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)