Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40071
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 30   2.6  
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)                 30   2.6  
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)                  30   2.6  
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 30   2.6  
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)              30   2.6  
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)              30   2.6  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   6.0  

>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 116 CFFTLERPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 167

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 168 AEDIKITKTLVAIVC 182


>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
          Length = 271

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 178 CFFTLKRPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 229

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 230 AEDIKITKTLVAIVC 244


>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
          Length = 276

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 123 CFFTLKRPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 174

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 175 AEDIKITKTLVAIVC 189


>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 269

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 116 CFFTLERPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 167

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 168 AEDIKITKTLVAIVC 182


>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
          Length = 331

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 178 CFFTLKRPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 229

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 230 AEDIKITKTLVAIVC 244


>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 326 CFVRIVMCFLHIVRICFRVCKTHSCLCYGN*ITSCYKRYNVSISIERHSAH**R*RSSVS 505
           CF  +     ++V +   +C   + +CY      CY R  V I++ +H A   R R+S+S
Sbjct: 178 CFFTLKRPLPNVVSLVGAICVPGAIVCY------CYSR--VFIAVRKHKASITRSRTSIS 229

Query: 506 SDPL---RTLVT*LC 541
           ++ +   +TLV  +C
Sbjct: 230 AEDIKITKTLVAIVC 244


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 269  YSVLVSRFDRNNQKGQSLSCFVR 337
            Y+ LV+R++R NQ+GQ+L   +R
Sbjct: 1458 YNELVTRYERENQEGQNLVSILR 1480


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,919,519
Number of Sequences: 59808
Number of extensions: 435475
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)