Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40068
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32728| Best HMM Match : Astacin (HMM E-Value=0)                     31   0.19 
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.0  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          26   4.1  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)                   26   4.1  
SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)                   26   5.4  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          25   9.4  

>SB_32728| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 321

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 52  TQIFGILTLADTDKDLGHADPAPTGMA*SASTV 150
           + IF  LTL +TD DL H+D  P G A  A  +
Sbjct: 22  SDIFDDLTLEETDLDLPHSDLPPEGFAGDAREI 54


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 169 HCLHMFKPYLRIKPCLLEQDRHD 101
           H LH   P    KPCLL+ D H+
Sbjct: 318 HGLHFGSPARARKPCLLDHDEHE 340


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 79  ADTDKDLGHADPAPTGMA*SASTV*TYADSASESMLMT*DSRSWTKWSRNNK 234
           +D ++  G AD  PT +A    ++ T++ SA+    +  D   W+ WS  NK
Sbjct: 373 SDANQSSGSADIHPTPVA----SIITWSSSANSRFPVDGDWTEWSTWSYCNK 420


>SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 189 HEHTL*STVCICSNRTCGLSHACWSRI--GMTEILVRICEGE 70
           H H    ++ + SN T G + +CW+ +  G+  + V++   E
Sbjct: 32  HRHVRKESLWVLSNLTAGPAESCWAVVHAGLVPVTVKMLASE 73


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 80   QIRTRISVMPILLQQAWLNPQVRFEHM 160
            Q+R R    P+LL +A LNP++  E M
Sbjct: 2138 QLRVRGEDFPVLLTEAPLNPKMNRERM 2164


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 87  GQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 212
           G+ +R   +C +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 84  YGQGSRSC--RSCSNRHGLIRKYGLNICRQCFREYAHD 191
           Y +GS  C  +SC   +    +YG N C  C   Y+ D
Sbjct: 144 YDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
          Length = 335

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 69  SHPRRYGQGSRSCRSCSNRH--GLIRKYGLNICRQC 170
           + P R+ +   SCR C  +H  G    Y   ICR+C
Sbjct: 275 ARPSRFDRNQNSCRFCGLQHDRGNCPAYNA-ICRRC 309


>SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)
          Length = 279

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 209
           ++ C++C   H L RK+G+   +Q   E    I  K+L
Sbjct: 230 NKHCKNCRKIHELARKHGIFQIKQLINEQRIWISEKEL 267


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 144 YGLNICRQCFREYAHDIGFKK 206
           Y  ++C+ CFR + HD   +K
Sbjct: 440 YRQHLCKVCFRAWMHDARMEK 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,875
Number of Sequences: 59808
Number of extensions: 154668
Number of successful extensions: 354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)