Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40063
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              144   5e-35
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           46   2e-05
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   34   0.099
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.6  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   2.8  
SB_11| Best HMM Match : E6 (HMM E-Value=2.2)                           29   2.8  
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)                28   4.9  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)             28   4.9  
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)                      27   8.6  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  144 bits (349), Expect = 5e-35
 Identities = 67/85 (78%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 180
           KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVY
Sbjct: 8   KRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVY 67

Query: 181 NASNNELVRTKTLVKNAIVVVDATP 255
           NASNNELVRTKTLVKN IV VD+TP
Sbjct: 68  NASNNELVRTKTLVKNCIVQVDSTP 92



 Score =  120 bits (289), Expect = 9e-28
 Identities = 58/95 (61%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +3

Query: 231 NCCSRCNS--FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 404
           NC  + +S  FRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK  AR+  AKV
Sbjct: 83  NCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKV 142

Query: 405 EGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 509
              +EEQF TGRL ACV+SRPGQ GR DGYILEGK
Sbjct: 143 APGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGK 177


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/69 (31%), Positives = 42/69 (60%)
 Frame = +1

Query: 49  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 228
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 229 AIVVVDATP 255
           +IV VD  P
Sbjct: 97  SIVQVDNKP 105


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 348 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKNSSSI 524
           ++S+K   K +   +L  +EG  E   H G LL    S    C R  GY ++G+  + +
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGRTKAMV 191


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +3

Query: 228 CNCCSRCNSFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 407
           C C + C     W   H+T+P G   G  +      I++ +  Q   +   A  RL ++ 
Sbjct: 626 CLCLTGCAVLESWAGIHWTIPDGTWSGCCMVPFSLRILHAELPQYIGKPNEALDRLYELN 685

Query: 408 GALEEQFHTGRLLACVASRPGQCGRAD 488
               +    G L A +A    +C R D
Sbjct: 686 RTCTQII--GNLSAGLAEDGSECSRTD 710


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 303 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 440
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 AIPHGAFAGLRGESPRSVWSRR 487
           A PH A +G+R  SPR +W  R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 422 AIPHGAFAGLRGESPRSVWSRRWL 493
           A PH A +G+R   PRS+W  R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 422 AIPHGAFAGLRGESPRSVWSRRWL 493
           A PH A +G+R   PRS+W  R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 AIPHGAFAGLRGESPRSVWSRR 487
           A PH A +G+R   PRS+W  R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253


>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
          Length = 485

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
 Frame = +3

Query: 255 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGALE-- 419
           F  W +    L   + +G  + E +E + N    +KT + YL         K++GA E  
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231

Query: 420 ----EQFHTGRLLACVASRPGQCGRADGYILEG 506
               E FH    L CV  +  +    DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264


>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 255 RSCIYYNNCILDKGLC 208
           R+C+  N CIL KGLC
Sbjct: 209 RTCVDMNECILGKGLC 224


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 345 KKRSQKTARKYLARQRLAKVEGALEE 422
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
          Length = 725

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 279 NATHTTA*RSCIYYNNCILDKGLCTHQFI 193
           NA +T   R+C+  NNC+++ G C  + +
Sbjct: 603 NAGYTGDGRACVEINNCLVNNGDCASKVV 631


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 148 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 246
           T++ +I D++ N   N  VR +TL+ NA +++D
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIID 48


>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
          Length = 223

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 207 YKDPCQECNCCSRCNSFRQWYESHYTL--PLGRKKGAKLTEAEEAIINKK 350
           YK P +    C  C + +   E H+ L  PL +KK  KLT+  E I N K
Sbjct: 106 YKVPDERI--CEICKNGQVENEDHFLLHCPLYKKKREKLTKTMEEIENVK 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,871
Number of Sequences: 59808
Number of extensions: 356054
Number of successful extensions: 1032
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)