Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                38   0.010
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +3

Query: 723 QEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           +EK H+ IVVIGH   G+STTTG  +    GGI
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIY-KCGGI 34


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 672  TITELEEPCHSTNHKWGQEKTHLYIVVIGHATPGRSTTTGSF 797
            T+T L E       K  +EKT L +   GHATP   TTT  +
Sbjct: 2467 TMTRLMEELEWPKLKESREKTRLALFYRGHATPQMYTTTRQY 2508


>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 537 TRNYVFKNIMTVCLHYTVYSIHYITH 460
           T  +V   I+TVC HYT  + HY TH
Sbjct: 370 TTRHVHHTILTVCAHYTPRTAHY-TH 394


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 699 HSTNHKW--GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGIGQP 830
           HS  +K   G E   + +V +G++    ST  G++VLP +G  G P
Sbjct: 170 HSKEYKTFRGFENRRILVVGLGNSAVYISTRRGTWVLPRLGPGGAP 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,025,143
Number of Sequences: 59808
Number of extensions: 495774
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)