Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                30   2.8  
SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)                 28   8.7  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 111 PVTKDENVPLPPV-RMSSDPAPKQVKWINRQR 203
           PVT+ ++VP PPV    S P    V W+NR R
Sbjct: 602 PVTEHDSVPCPPVTEHGSVPEHGSVPWMNRIR 633


>SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 782

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 54  FKAMVKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLV 212
           FK + + KK  K    +      +E + +   RM   P   +VKW+ RQRVL+
Sbjct: 77  FKFIKQAKKDDKGIDSVANDDGSEETIRMDEKRMLGHP---RVKWMERQRVLL 126


>SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = -3

Query: 869 PKLGTRAFPRNKPCPKVWPGT-*WNLGISPINGAP-TND------PGEYLD 741
           P+ G+  FP++ P  K++P T      +SP++  P TN+      PGEY D
Sbjct: 119 PRRGSSHFPKDAPYKKIYPSTNTLYTSLSPLSRKPLTNECRDYSKPGEYQD 169


>SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 108 EPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRG 227
           EP+T  EN  +PPV +      K+V  IN   ++V  M G
Sbjct: 15  EPLTVGENGDIPPVEIKEIHLKKEVSLINGVALVVGVMIG 54


>SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)
          Length = 319

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 221 ERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNK 361
           +RY+ + + F E   KL  H KTE K   +++LY + + +E +   K
Sbjct: 215 KRYERAEKEFVES--KLDLHRKTERKEMLTEHLYAIIQENEQRKAKK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,094,901
Number of Sequences: 59808
Number of extensions: 672310
Number of successful extensions: 1596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)