Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40047
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  73   3e-13
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)               29   3.7  
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)                   29   4.9  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_38036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
 Frame = +1

Query: 358 TFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVFMTVTLL 522
           + N+D +K+VYSNED E+K+IPYFWE FD E YS+W+ EYK  Y ++L  VFM   L+
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLV 59



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = +3

Query: 510 CNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 614
           CNL+ GM QRL+K+ K  F S+C+FGE++N +I+G
Sbjct: 56  CNLVGGMIQRLEKLVKNGFGSICIFGENHNCSIAG 90


>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 721 SSLERIQVSSSRRNS*STAKSDDSG-NTSSFPRHTHTPEMVELLSSPNRQTDAKACLRIL 545
           SSL+ +Q   + +   S      +G N    P+H HTP+++  LS     T+   C +  
Sbjct: 694 SSLDYVQRGKTPQRPWSMLIESPNGYNLPGSPKHAHTPQLITDLSRSASGTNLSRCSQKT 753

Query: 544 SNL 536
           S+L
Sbjct: 754 SSL 756


>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
          Length = 246

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 632 SAPHPHSGDGGIVVFTKQADGCESLFAHF 546
           S PHP  GDGG ++   + +G E  ++ F
Sbjct: 138 SRPHPRQGDGGKLLIEDELNGVEYSYSFF 166


>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
          Length = 558

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 613 ECGCGAEKNSCSRCRLIWQWTTSSYDWKKLGSFRARRPRKFFQDYF-FVGTKPT 771
           E G G  K    +    WQ     +DW+K       +PR+FF+ +  F+ +K T
Sbjct: 364 ELGSGKAKKDAKK----WQRRAIKHDWRKQCEHLKEKPREFFKTFKPFLSSKNT 413


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 640 SSFPRHTHTPEMVELLSSPNRQTDAKACLR 551
           S+ PR   + E + LL  P  + DA+AC+R
Sbjct: 413 SAIPRSRRSFESLPLLQQPTSRRDARACVR 442


>SB_38036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 684 LRLEETWILSSEETKKIFPRLLLRGNETDKKRVENFNPGQDISS 815
           L    TWI      KKI PR+L RG++  +    N  PG  + +
Sbjct: 51  LTYNNTWI------KKIGPRILKRGSQRGETAYRNVEPGSQVKA 88


>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 686 TTGRNLDPFERGDQENFSK-TTSSWERNRQKTGRK 787
           T G+  D      ++   K TT++W++ RQ TG+K
Sbjct: 57  TLGKKHDKHSAKTRQTLGKNTTNTWQKTRQTTGKK 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,340,820
Number of Sequences: 59808
Number of extensions: 617451
Number of successful extensions: 1794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)