Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20188
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47413| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 9e-32
SB_42906| Best HMM Match : FAA_hydrolase (HMM E-Value=8.8e-40) 117 9e-27
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 32 0.55
SB_6005| Best HMM Match : DUF488 (HMM E-Value=4.3) 31 0.96
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9) 29 3.9
SB_6330| Best HMM Match : DUF678 (HMM E-Value=5.5) 29 3.9
SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 29 5.1
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 29 5.1
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0) 28 6.7
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7) 28 6.7
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 28 8.9
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44) 28 8.9
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 8.9
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 8.9
>SB_47413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 134 bits (323), Expect = 9e-32
Identities = 73/165 (44%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPF AKN ++ISPW+VT+EAL+PF+ N Q P P PYL+H D + FDIKL+V +
Sbjct: 68 VPLGPFLAKNFATSISPWVVTMEALQPFVTANPVQIPEPLPYLQHSDPYTFDIKLQVALN 127
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARLGHHQWGG--GGLVWEHV 607
+C +N++YMYWT KQQ H + TG R G G G +
Sbjct: 128 CPGINNPAVICNTNFKYMYWTQKQQLAH--HTI---TGCNVRPGDLMGSGTISGETPDSY 182
Query: 608 GTVLE----GTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
G++LE GTKP+ L G RKF+QDGD AQ DG R+G
Sbjct: 183 GSLLELCWKGTKPLDLGNGVTRKFLQDGDEVVMTGFAQGDGFRVG 227
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = +3
Query: 129 AFVGGPPTQLGERVCAKDAEDKIFGFVLLNDWSARDIQKWEY 254
AF GP LGE + A+D IFG VL+NDWSARDIQKWEY
Sbjct: 26 AFFVGPGNNLGEPIPIDKAQDHIFGMVLMNDWSARDIQKWEY 67
>SB_42906| Best HMM Match : FAA_hydrolase (HMM E-Value=8.8e-40)
Length = 223
Score = 117 bits (282), Expect = 9e-27
Identities = 67/164 (40%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Frame = +2
Query: 254 LPLGPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFPYLRHDDKFNFDIKLEVDIQ 433
+PLGPF +KN S+ISPWIVT++AL F V Q PTP PYL+ FDI LEV I+
Sbjct: 50 VPLGPFLSKNFASSISPWIVTMDALEAFRVKGPEQSPTPLPYLQQTGDHAFDINLEVSIK 109
Query: 434 TEKSPVVTTVCRSNYRYMYWTVKQQW-RTDCHGLQPQTGRLARLGHHQWGGGGLVWEHVG 610
E+S T V +SN++YMYW++ QQ +G + +G + G G + G
Sbjct: 110 PEESD-ETIVSKSNFKYMYWSMSQQLAHHTVNGCRVNSGDMMGSGTI----SGPTPDSFG 164
Query: 611 TVLE----GTKPVRLSTGEERKFIQDGDTSRCAATAQRDGLRIG 730
++LE G P++L+ G ERKFI D DT + + +RIG
Sbjct: 165 SMLELTWGGKNPIKLNDGTERKFINDNDTVIIRGYCENEDMRIG 208
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +3
Query: 108 DFELEVGAFVGGPPTQLGERVCAKDAEDKIFGFVLLNDWSARDIQKWEY 254
DFELE AF+ +GE + ++AED IFG VL NDWSARDIQKWEY
Sbjct: 2 DFELET-AFITTDANLMGEPIPVEEAEDYIFGMVLFNDWSARDIQKWEY 49
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 31.9 bits (69), Expect = 0.55
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 720 SPSR*AVAAQRDVSPSCMNFLSSPVERRTGLVPSRTVPTCSQTSPPPPH*WCP-SRASLP 544
SPS + + SP M+ L S +R G+ PS +VP SQ + PP P S AS P
Sbjct: 274 SPSLQPPSQRSTPSPQSMSALHSGKPKRPGMPPSPSVPHQSQPAVPPAFATPPRSGASTP 333
>SB_6005| Best HMM Match : DUF488 (HMM E-Value=4.3)
Length = 142
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 620 PGQFQHAPKRVRRLPTDGARAEQVSRSEVAARDSLCAIAVSPSNTCTDSSNGKRWSP 450
P +F H V+RL + + ++ R + D L I SP+ D+ N K W P
Sbjct: 48 PREFMHLQLEVKRLQVEQEKQAEIDRQNLVIIDKLSEIKTSPAR--VDAWN-KDWKP 101
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 416 LEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARLGHH 571
++ D+ ++ SP+ + + YW + D G P+ GR A L HH
Sbjct: 456 VQFDVASDGSPLPPNILDPSATLRYWRDRSPTTYDIVGRVPEVGRYAILLHH 507
>SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9)
Length = 204
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 645 ERRTGLVPSRTVPTCSQTSPPP 580
ERR G PSR V TC +SP P
Sbjct: 174 ERRKGGCPSRPVLTCGTSSPTP 195
>SB_6330| Best HMM Match : DUF678 (HMM E-Value=5.5)
Length = 200
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 407 DIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQTGRLARL 562
D+K + + E P+ + + NY + + + RT C L P+ GRL L
Sbjct: 63 DVKQRMSAE-ETLPIESVIDLHNYLVSNYIITNELRTLCGSLSPRCGRLMAL 113
>SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 428 IQTEKSPVVTTVCRSNYRYMYWTVKQQWRTDCHGLQPQ 541
++TE +P+V C + + +K QW DC + Q
Sbjct: 233 VKTEDNPMVVPTCSRSKDIVEPLIKPQWYVDCQDMAAQ 270
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 601 LPNESAASPLMVPEPSKSPGLRLQPVTVCAPL 506
L ES+ P + PEP P L +++C P+
Sbjct: 2754 LRGESSGKPYIAPEPDPEPTYNLGYMSICQPV 2785
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 175 AQTLSPSCVGGPPTN-APTSSSKSISLQGPKWGAAPST 65
A T++P+ G P T APT++ + + P APST
Sbjct: 345 ATTVAPTTTGAPTTTGAPTTTGAPSTTEAPSTTEAPST 382
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 263 GPFTAKNLGSTISPWIVTLEALRPFIVDNFPQDPTPFP 376
GP T+ + S +S ++ E L+ ++++ Q+P P P
Sbjct: 913 GPCTSASSTSHVSTMSLSFEELKKSVLESLRQEPAPIP 950
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 220 SFKSTKPKILSSASLAQTLSPSCV-GGPPTNAPTSSSKSI 104
SF S P S+S + SPS PP++ P+SSS S+
Sbjct: 149 SFPSVPPSSPPSSSSPSSSSPSVPPSSPPSSPPSSSSSSL 188
>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
Length = 1264
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 211 STKPKILSSASLAQTLSPSCVGGP--PTNAPTSSSKSISLQ 95
+TKPK+L+SAS + + V P PT PT S + S++
Sbjct: 918 ATKPKVLTSASKPTSYATKTVPPPPKPTQHPTKSVPASSVR 958
>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
Length = 703
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 720 SPSR*AVAAQRDVSPSCMNFLSSPVERRTGLVPSRTVPTCSQTSPPP 580
+PS A + V PS N L+SP T +VP P+ S+T PP
Sbjct: 545 TPSNSTSATEVGVRPST-NDLNSPQLVNTAMVPIVISPSSSETYSPP 590
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 151 VGGPPTNAPTSSSKSISLQGPKWGAA 74
+GGPP T++S +SL P+ G +
Sbjct: 522 IGGPPLEVATAASSQLSLSSPQPGVS 547
>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
Length = 376
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 693 QRDVSPSCMNFLSSPVERRTGLVPSRTVPTC 601
Q DVSPS N SS + GL+P T P C
Sbjct: 51 QNDVSPSFKNTSSSTQDESKGLLPG-TQPDC 80
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 616 DSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRP 491
+++ +L +A MVPE + +P + P T AP+ P
Sbjct: 22 ETTAVLETSAAPETTMVPETTSAPATTMAPETTAAPVTTMAP 63
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 616 DSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRP 491
+++ +L +A MVPE + +P + P T AP+ P
Sbjct: 1097 ETTAVLETSAAPETTMVPETTSAPATTMAPETTAAPVTTMAP 1138
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 616 DSSNMLPNESAASPLMVPEPSKSPGLRLQPVTVCAPLLFHRP 491
+++ +L +A MVPE + +P + P T AP+ P
Sbjct: 2349 ETTAVLETSAAPETTMVPETTSAPATTMAPETTAAPVTTMAP 2390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,651,018
Number of Sequences: 59808
Number of extensions: 704286
Number of successful extensions: 2220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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