Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20183
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 7e-15
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 35 0.067
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12) 31 0.82
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 31 1.4
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.9
SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16) 29 3.3
SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33) 29 5.8
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 78.2 bits (184), Expect = 7e-15
Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 VLASN-NVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY 429
VLAS NVG++ +L+D GYPRDDIDVY VR AR++IICLQNDHK M+ IE G+ KV+
Sbjct: 29 VLASQKNVGMEENLIDAEGYPRDDIDVYTVRIARNRIICLQNDHKAKMKEIEEGLHKVH 87
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 504 EGETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHS 674
+ VN F + V SPA +AGL D +++FGS++ +NF+ + I +V HS
Sbjct: 122 QSRDVNLTPFLRVESVTPHSPAAKAGLEVGDNILKFGSLSAQNFQGLQNIASVVQHS 178
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 35.1 bits (77), Expect = 0.067
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 522 DPTFA-TISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGITV- 695
D FA I + +GSPAE A LR DE+++ + +NF I+ I N I +
Sbjct: 63 DEGFAPNIDSIAQGSPAERANLRIGDEILEVNGTSVENFSHAEVILSIHKCLKNRVIALK 122
Query: 696 IVRRENADLTF 728
I+R +N F
Sbjct: 123 ILRGDNPQGNF 133
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 507 GETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKN 632
G T+ + VDKGSPA +A L+ D +++ +N +N
Sbjct: 307 GFTLTGNAPVCVRLVDKGSPAAQARLKPGDHILEINGLNVRN 348
Score = 31.5 bits (68), Expect = 0.82
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 507 GETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKN 632
G T+ + VDKGSPA +A L+ D +++ +N +N
Sbjct: 475 GFTLTGNAPVCVRSVDKGSPAAQARLKPGDHILEINGLNVRN 516
>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
Length = 217
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 540 ISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGITVIVRRENAD 719
++FV K SPA GLR D+++Q N F D + M+ + ++ + VR +
Sbjct: 68 VAFVHKDSPAALGGLRFGDQILQIDGENMAGF-DTDKAMKRLKNASPQRVVFAVRDRPFE 126
Query: 720 LTFEL 734
T L
Sbjct: 127 RTIVL 131
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -3
Query: 132 EAFDSRFVEKSIMLD-GYNYCNCKFADLIRCID---FCFENALQN 10
E + ++VE+ ++ G YC+ F D+++C+D FC EN L N
Sbjct: 356 EINEKQYVEQGQTIECGCCYCDVAFEDMVQCLDGHLFC-ENCLMN 399
>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 421
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 367 CLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINS 477
C+ N H + Q I + VYE ++SP + ++EINS
Sbjct: 307 CVMNHHPQHQQRIRQAYT-VYEKQVNSPRLPNDEINS 342
>SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)
Length = 625
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 371 RQIIL*RACLTS*TSMSSRGYPSSSTKE--PFKPTLLDANTRNDHESNV 231
RQI + S S S G P ++TKE PF +LL + T N H+ +V
Sbjct: 70 RQIAITDTMEDSNNSTSETGTPDTTTKEHEPFLVSLLPSLTDNSHKDSV 118
>SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)
Length = 663
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 510 ETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFK-DVSQIMRIVSHSINYG 686
E VNDP F ++ AE A ++HD L + K K + + +R+ +I+
Sbjct: 10 EAVNDPRFYIHHRKEESEEAERAIRKSHDSLERKLLKTPKAIKREFQERLRL---NISGK 66
Query: 687 ITVIVRRENADLTFELVPKPWAKPGYWD 770
+ + R++ A L+ P + YWD
Sbjct: 67 VYELSRKQLAKYPNSLLSSPAKRLSYWD 94
>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 298 DELGYPRDDI--DVYEVRHARHKIICLQNDHKKVMQLIERGIAKVYEDL 438
D + R D+ D+ ++ R K++ +N++K ++L++RG + EDL
Sbjct: 188 DRVTPSRQDLLADMAKITRERDKLLKEKNNYKDELKLLDRGFFEEVEDL 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,502
Number of Sequences: 59808
Number of extensions: 477714
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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