Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20175
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   6e-16
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        47   1e-05
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)         29   4.5  
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38231| Best HMM Match : Yippee (HMM E-Value=4)                      28   6.0  
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   6.0  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +3

Query: 240 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 407
           L +  RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 264
           NPL EKRP+NF IG  IQP RDLSRFV  P
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL 658
           N +T LVE KKA L      + P+         CRKM VPYCIVKGK+RL
Sbjct: 141 NHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARL 190



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +1

Query: 535 EEGALVVIAHDVDPIELVLFLPAL 606
           ++  LVVIAHDVDPIE+V++LPAL
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPAL 173


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = +2

Query: 509 NTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYCRKMGVPYCIVKGKSRL 658
           N +T LVE KKA L      + P+         CRKM VPYCIVKGK+RL
Sbjct: 50  NHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARL 99



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +1

Query: 535 EEGALVVIAHDVDPIELVLFLPAL 606
           ++  LVVIAHDVDPIE+V++LPAL
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPAL 82


>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 280 WMRIYLGHLQIWTSPELAECPDQW 209
           W  +Y GHL++W    ++ CP+ W
Sbjct: 256 WKCVYGGHLRLWL---ISSCPESW 276


>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216 SGHSANSGLVQICRWPKYIRIQRQKAVL 299
           SGH+ N  L Q  +W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
          Length = 230

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216 SGHSANSGLVQICRWPKYIRIQRQKAVL 299
           SGH+ N  L Q  +W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 216 SGHSANSGLVQICRWPKYIRIQRQKAVL 299
           SGH+ N  L Q  +W KYI  ++ K  L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 485 PLWWRLIFLGNLSFSSFPQPLFPG 414
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 TSASSESAPSDQPIYPDTG 352
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,971,988
Number of Sequences: 59808
Number of extensions: 388985
Number of successful extensions: 1151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)