Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20174
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              123   1e-28
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_45531| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-25)                 29   2.3  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    29   3.0  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                29   3.0  
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)        29   4.0  
SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)                 28   5.2  
SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)                 28   6.9  
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)                 28   6.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  123 bits (297), Expect = 1e-28
 Identities = 58/92 (63%), Positives = 65/92 (70%)
 Frame = +3

Query: 255 KNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLY 434
           K  EAR KGRH G GKR+GTANARMPQK +W                AKKID H+YHSLY
Sbjct: 93  KADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLY 152

Query: 435 MKAKGNVFKNKRVLMEYIHRKKAEKPGRRCLA 530
           MK+KGNVFKNKRVLMEYIH+KKAEK   + L+
Sbjct: 153 MKSKGNVFKNKRVLMEYIHKKKAEKARSKLLS 184



 Score =  120 bits (288), Expect = 1e-27
 Identities = 55/85 (64%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
 Frame = +1

Query: 19  PY*FFLVCVGSH--RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRK 192
           PY  +++ V  H  +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK
Sbjct: 12  PYDTWILVVQLHCKKVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRK 71

Query: 193 MIKDGLVIKKPVAVHSRARVRKTQK 267
           +IKDGL+IKKP  VHSRARVRK  +
Sbjct: 72  LIKDGLIIKKPEIVHSRARVRKADE 96



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +2

Query: 506 EARTKMLSDQAEARRNKVKEARNRRKERIAAKKED 610
           +AR+K+LSDQAEARRNK K A+ RR +R+  K++D
Sbjct: 177 KARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKD 211


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 506  EARTKMLSDQAEARRNKVKEARNRRKERIAAKKED 610
            E   KM  +Q E  R K +E   +RKE   +KK+D
Sbjct: 1035 EGEKKMKDEQDEIERKKAEEEEKKRKEEEESKKKD 1069


>SB_45531| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-25)
          Length = 387

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -1

Query: 314 CTSSLTKATVTTLSTCFCVFRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFGS 135
           C  S+   T+T ++  F V  T+      + F + R  L IL  + L ++  I  ++FG 
Sbjct: 65  CCLSILLLTITAINRSFQVVDTKFY---GSIFTVKRTQLFILLAYVLGILNPIQYLAFGE 121

Query: 134 NHTF 123
            +TF
Sbjct: 122 RYTF 125


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 201 GWSRHQETCSSTLPRSCPKNTEARRKGRH 287
           G   H  T  + + R CP NT  RR+ RH
Sbjct: 109 GHPNHTGTAGTGIARYCPSNTRNRREERH 137


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 524 LSDQAEARRNKVKEARNRRKERIAA 598
           L +Q EARR +++EA+ RR+ R+ A
Sbjct: 86  LQEQLEARRIQLREAQRRRRARVRA 110


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +1

Query: 97  ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKTQKHV 273
           A+V   G ++   +P  EINE ANT +   I +   +G V++    V    R R+ +K +
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVLEPVEVVQKGKRSRRKRKLI 566

Query: 274 ---ERVVTVALVREEV 312
              E++++  +++ ++
Sbjct: 567 VDEEKILSTEVIKTQL 582


>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
          Length = 427

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 99  GCKPLLQLEGTHPDTVRSNAHKKEL 25
           GCKP L     HPDT +  A+ + L
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAYNEAL 360


>SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)
          Length = 527

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 204 WSRHQETCSSTLPRSCPKNTEARRKGRHCGFGKRRGTANARMPQKEL 344
           W +H +TCS     +C K   AR+ GR      +RG  N R  Q+ +
Sbjct: 169 WEKHTDTCS-----TCEKEEFARKGGR--PKKSKRGGGNTRKAQRRI 208


>SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 204 WSRHQETCSSTLPRSCPKNTEARRKGRHCGFGKRRGTANARMPQKEL 344
           W +H +TCS     +C K   AR+ GR      +RG  N R  Q+ +
Sbjct: 29  WEKHTDTCS-----TCEKEEFARKGGR--PKKSKRGGGNTRKAQRRI 68


>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
          Length = 262

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 278 LSTCFCVFRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFG-SNHTFFLPHRIT 102
           +ST     RTR+ +C     + TR  ++I     +   F  SL+SF   N +FF+  ++ 
Sbjct: 28  MSTVARAVRTRSYKCWCLSHIFTRKQVLIRTATWVFYGFYGSLVSFSLLNGSFFVVRQLQ 87

Query: 101 E 99
           E
Sbjct: 88  E 88


>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
          Length = 611

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 455 VQEQACAHGVHPQEEG*EARTKMLSDQAEARRNKVKEARNRRKERIAAKKE 607
           V E+     VH + E  EAR +     AE  R +++E + R +E +  KKE
Sbjct: 158 VMERDRLLAVHKEHEKEEARRRGEKVIAEQLRGQMEELKLREEEAVMLKKE 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,304,470
Number of Sequences: 59808
Number of extensions: 472431
Number of successful extensions: 1577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)