Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20167
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       32   0.45 
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               30   1.8  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.8  
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)                29   5.5  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.3  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                28   9.7  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   9.7  

>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 281 LCCKQIISLGSRSKNHRDHL*EFVGLIHILCRRSDKCQVRMLGL 150
           LCC  + +          ++  F+ LI ILC  + KC+ R+LGL
Sbjct: 293 LCCASVCAYACACVPGDVYVLLFISLIIILCPENSKCEPRLLGL 336


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 372 TQCNHHDYNNNNHITSSFPY 431
           T  NHH +++NN++T++FP+
Sbjct: 523 TTHNHHSHDHNNNLTTAFPF 542


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
 Frame = +2

Query: 140 YVEEDQAFGPGTCRYGGKVYVSAQQIPR------DDP----CDFCFCFLVILFAYNKAVL 289
           +++ D    P TC Y GKV+  A+ IP+      + P    C++C C      + +K VL
Sbjct: 616 HLDSDHEIEPRTCEYCGKVFTLAKYIPQHLKSLHNHPAPFECNYCVCKFQSQNSLSKHVL 675

Query: 290 HPYMD 304
             +M+
Sbjct: 676 GLHMN 680


>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
          Length = 702

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 62  PIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRYGG 190
           P    AG    +FP     GYG   DY  +    GPG   YGG
Sbjct: 73  PAFPFAGYSPGDFPEYGPDGYGWGDDYGADGGGAGPG--GYGG 113


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 278 CCKQIISLGSRSKNHRDHL*EFVGLIHILCRRSDK 174
           C    + L  R+KN    L EF+G++  LC+R D+
Sbjct: 385 CVLPSVKLALRAKNEAARL-EFLGILSYLCQRFDR 418


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = +2

Query: 2   GTRPSESPSTELP--KPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGT 175
           G RP + P    P  K I   T    + G + +   P     +G   D + +D A G  T
Sbjct: 378 GYRPEKLPLRRTPDEKAICDHTGCGPVFGGDSAFGDP----WFGFGCDLLIDDNAGGEKT 433

Query: 176 CRYGGKVYVSAQQIPRDDPCD 238
           C      Y   Q    D PCD
Sbjct: 434 CSTEPYKYARPQGASSDGPCD 454


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 8   RPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRYG 187
           R +  PS   P+P+  E    +   P+E   PP   S Y  + D V ++   G  + R  
Sbjct: 264 RVAVQPSRAKPEPVELEVESGDTGAPQELPAPPVPFS-YYWKMDQVLDEFVAGTPSFRVT 322

Query: 188 GKVYVSAQQ 214
           G V  S ++
Sbjct: 323 GGVKTSPEE 331


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 11  PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSG 121
           P+E P+ ++P P++ E P       ++  +PP   +G
Sbjct: 789 PAEEPAPQVPPPVSHEVPTAGGPVSDQDEWPPLMPAG 825


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 11  PSESPSTELPKPITSETPI--DEIAGPEESNFP 103
           PS + S   PKP+ + TP    +++ P+E+N P
Sbjct: 68  PSVTSSPVQPKPVVTSTPYSGSDLSSPDENNGP 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,399,122
Number of Sequences: 59808
Number of extensions: 552130
Number of successful extensions: 1632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)