Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  33   0.22 
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   30   1.6  
SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)               29   2.7  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   4.8  
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 223 VLRMLRGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQHLSLKDSW 378
           V++   G  TC+ WS D KY++      L+ + S   H++R +       SW
Sbjct: 311 VMKSYFGGLTCVCWSPDGKYVVTGGEDDLITVWSF--HELRVIARGQGHQSW 360


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 401 PSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPF-EFT--CNMYLLSSLHEIHV 249
           PSRW+L    S + + C  RTS S   N  T  + ++T   + Y+ S L  + +
Sbjct: 424 PSRWRLTQLSSQSCESCSTRTSKSQESNTETSSYLQYTQPASFYVTSKLTAVSI 477


>SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)
          Length = 456

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 146 ITKKMYFTSASSRLLLYDCLTWELKKSYGCYEGLLRVFHGATTANTYCR 292
           +T++ Y    ++  +L+ C+T   ++ Y CY   L++ H + T  T  R
Sbjct: 203 VTQEHYRCYTNALQMLHKCVTDVTQEHYRCYTNALQMLHKSITDVTQMR 251


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 401  PSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPF 300
            PSRW+L    S + + C  RTS S   N  T  +
Sbjct: 2433 PSRWRLTQLSSQSCESCSTRTSKSQESNTGTSSY 2466


>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 380 HQLSFNDKCCKLRTS*SAADNISTKPFEFTCNMYLLSSLHEIHVADPRNIRRTFSV 213
           ++LS  D C  L    + AD +ST     TC   L +   E  + DPR++R   ++
Sbjct: 437 YKLSIAD-CSTLEELLAPADEVSTVAEPVTCQQDLKAEPDETPLPDPRSMRELLAL 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,706
Number of Sequences: 59808
Number of extensions: 335005
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)