Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20151
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                 84   1e-16
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)           80   2e-15
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14)           29   5.7  
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)                28   7.6  

>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
 Frame = +3

Query: 183 KLGKLLIEGKTKQVFDVPDQPGYCCFLTRTESPQRWCQSPR---FGGKGGYFQSDKCKSV 353
           K+G+ +IEGKTK V+ +PD P     L +++       + R     GK     +  C   
Sbjct: 2   KIGEKIIEGKTKIVYALPDSPDGNHVLLKSKDKITAFDATRKDEMSGKAAQSTATTCAIF 61

Query: 354 RNLKVCRNQNCLR*DCL*NCVLIQKM*DDPH*MGYPPPCNWLVP----KKESWCTRGFRF 521
             LK C  +      C  +      +  +   +     C  +      K+      G+RF
Sbjct: 62  EMLKACGLKTHFVKRCESDPEAFIGIACEM--IPLEVVCRRIATGSFLKRYPGVKEGYRF 119

Query: 522 TPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDE-HYMRKATILIFEILEKAWV 698
           TPPKQE F KDDA HDP W+ EQ + A F   G  IG+ E   M ++ I IFEI+E+AW 
Sbjct: 120 TPPKQEFFLKDDAQHDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIERAWA 179

Query: 699 CVTAHLL 719
            V   L+
Sbjct: 180 TVDVALV 186



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
 Frame = +1

Query: 286 DGVKAHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASET--AFLSKKCEMIPIEWVT 459
           D  +  ++ GKAA S  T   +FE+LK+ G+KT FVK       AF+   CEMIP+E V 
Sbjct: 39  DATRKDEMSGKAAQSTATTCAIFEMLKACGLKTHFVKRCESDPEAFIGIACEMIPLEVVC 98

Query: 460 RRLATGSFLKRNPGVPE 510
           RR+ATGSFLKR PGV E
Sbjct: 99  RRIATGSFLKRYPGVKE 115


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 510 GFRFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDE-HYMRKATILIFEILE 686
           G+RFTPPKQE F KDDA HDP W+ EQ + A F   G  IG+ E   M ++ I IFEI+E
Sbjct: 26  GYRFTPPKQEFFLKDDAQHDPFWTYEQCVEAAFEIGGRKIGKHELDIMSESAIAIFEIIE 85

Query: 687 KAWVCVTAHLL 719
           +AW  V   L+
Sbjct: 86  RAWATVDVALV 96



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +1

Query: 436 MIPIEWVTRRLATGSFLKRNPGVPE 510
           MIP+E V RR+ATGSFLKR PGV E
Sbjct: 1   MIPLEVVCRRIATGSFLKRYPGVKE 25


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 87   SSRDPHRIGSSLHSYL-RSKIAKMSHPKQVGQYKLGKLLI 203
            +S  P  +GSS  S L R+ +A  +HP+  G Y L +L+I
Sbjct: 964  TSDHPRYLGSSSSSSLPRNILATSAHPRYHGSYLLSQLII 1003


>SB_47011| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-14)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 174 GQYKLGKLLIEGKTKQVFDVPDQPGYC-CFLTRTESPQRWCQSPRFGGKGGYFQSDKC-- 344
           G +  G+  IEG+    F + +    C  F  + +S     +S     +  Y  S KC  
Sbjct: 200 GGFGYGERNIEGERILEFSIANNFVICNSFFQKRKSHLVTYESGGASTQVDYILSQKCHF 259

Query: 345 KSVRNLKVCRNQNC 386
           KSV N+KV  N+ C
Sbjct: 260 KSVHNVKVITNEEC 273


>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
          Length = 511

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 786 VRIDDIRQTMLPSVSTPNSIFMSISAQSRR 697
           V  DD+RQTM   +S P    M +SA++ R
Sbjct: 393 VTADDLRQTMSSILSIPRQSIMGLSAKALR 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,140,027
Number of Sequences: 59808
Number of extensions: 571953
Number of successful extensions: 1495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)