Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20150
(525 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 8e-25
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 33 0.14
SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33) 29 2.3
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 29 3.1
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 29 3.1
SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 29 3.1
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 7.2
SB_5127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 27 9.5
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 110 bits (264), Expect = 8e-25
Identities = 50/58 (86%), Positives = 55/58 (94%)
Frame = +2
Query: 254 SKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 427
SK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 50 SKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107
Score = 46.8 bits (106), Expect(2) = 5e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1
Query: 139 KLQEPILLLGKEKFSMVDIRVTVKGGG 219
K++EPILLLGKE+F VDIRV VKGGG
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGG 37
Score = 20.6 bits (41), Expect(2) = 5e-06
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 13 QAVQVFGRK 39
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 263 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 373
++AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 53 VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 134 STNFRNLSFCSARKNSLWSTSE*QSRVVACSTSLRYPTSYSK-ALIAFYQKYV------- 289
ST + LSF SA+KN + + +R S+S R PTS K L+ + Y
Sbjct: 7 STPKQRLSFTSAKKNLITAKLTDATRTRDVSSSKRTPTSLQKDVLLGSTRSYEQTPSGVR 66
Query: 290 DEASKKEIKDILV 328
D S+KE+K +L+
Sbjct: 67 DGRSRKEVKVVLL 79
>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
Length = 759
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 158 FCSARKN--SLWSTSE*-QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILV 328
FC ++ SLW E Q R + C T R+P S + F V+ S KE K L+
Sbjct: 107 FCCSKPEFESLWVEIEIPQQRNIVCGTIYRHPNSNLDITLNFLYDIVERVS-KENKFCLI 165
Query: 329 QYDRSL 346
D +L
Sbjct: 166 MVDFNL 171
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 158 FCSARKN--SLWSTSE*-QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILV 328
FC ++ SLW E Q R + C T R+P S + F V+ S KE K L+
Sbjct: 375 FCCSKPELESLWVEIEIPQQRNIVCGTIYRHPNSNLDTTLNFLYDIVERVS-KENKFCLI 433
Query: 329 QYDRSL 346
D +L
Sbjct: 434 MGDFNL 439
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 158 FCSARKN--SLWSTSE*-QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILV 328
FC ++ SLW E Q R + C T R+P S + F V+ S KE K L+
Sbjct: 1160 FCCSKPELESLWVEIEIPQQRNIVCGTIYRHPNSNLDTTLNFLYDIVERVS-KENKFCLI 1218
Query: 329 QYDRSL 346
D +L
Sbjct: 1219 MGDFNL 1224
>SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 343
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 158 FCSARKN--SLWSTSE*-QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILV 328
FC ++ SLW E Q R + C T R+P S + F V+ S KE K L+
Sbjct: 131 FCCSKPELESLWVEIEIPQQRNIVCGTIYRHPNSNLDTTLNFLYDIVERVS-KENKFCLI 189
Query: 329 QYDRSL 346
D +L
Sbjct: 190 MGDFNL 195
>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 158 FCSARKN--SLWSTSE*-QSRVVACSTSLRYPTSYSKALIAFYQKYVDEASKKEIKDILV 328
FC ++ SLW E Q R + C T R+P S + F V+ S KE K L+
Sbjct: 34 FCCSKPELESLWVEIEIPQQRNIVCGTIYRHPNSNLDTTLNFLYDIVERVS-KENKFCLI 92
Query: 329 QYDRSL 346
D +L
Sbjct: 93 MGDFNL 98
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 183 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 97
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 147 LKFVLQQSGLNQVQWTPVYT 88
LK SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217
>SB_5127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 124 RLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGM*HKFTLSD 246
R L+Y L++P G K I TV GGG H +SD
Sbjct: 12 RDLRYMLEDPAYFAGAPKVRPQSIVRTVAGGGDPHNGGVSD 52
>SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 404 HGHLDHRTSWARSDAGQPPANSYRIELG 321
HG L+H + WA A Q P +I+LG
Sbjct: 30 HGRLNHESVWA--SASQSPGEYIQIDLG 55
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 110 TWLSPDCCSTNFRNLSFCSARKNSLWSTS 196
TW+ P C S+NF + S ++ NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743
>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 27.1 bits (57), Expect = 9.5
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Frame = +2
Query: 131 CSTNFRNLSFCSARKNSLWSTSE*QSRVVACSTSL--RYPTSYSKALIAFYQKYVDEASK 304
C+ N N S C+ RK+ S+ V+AC TS + TS K + +K +
Sbjct: 710 CTVNHENNS-CTFRKSR--SSVRESLPVMACRTSWWGQTDTSLGKVIGFLPRKDIRSGVT 766
Query: 305 KEI----KDILVQYDRSLLVADPRRCEPKK-FGGPGARARYQKSYR*AFKKTIGWYRR 463
EI K + + L C+P G PG Y + YR WY +
Sbjct: 767 VEILHGDKCYTSEPNAKLNATIDLICDPNAGIGNPGPEGNYTQVYRAPCSYVFAWYSK 824
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,556
Number of Sequences: 59808
Number of extensions: 377797
Number of successful extensions: 831
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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