Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20144
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)             33   0.18 
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              28   8.7  

>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
          Length = 1130

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +3

Query: 414  IHTEKEVSLHL--LGPGCTR-SVLLFCFSPFLLDIEFSQ*FLAHYH*CHSQTRNGHVMLS 584
            I T+KE+ LHL   G G    +V  F +S  LLD+ F +  L +     S TRNG  ++ 
Sbjct: 826  ILTDKELILHLTYFGFGVLGLTVHTFFYSVLLLDVIFREDTLLNV--IRSVTRNGRSIIL 883

Query: 585  T*IMFYVYIYVF 620
            T I+  + +Y+F
Sbjct: 884  TGILALIIVYMF 895


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 412 LYTPKKKFHFIYLAQVVRAPFYFF 483
           L    K FH   L++V+RAP YFF
Sbjct: 476 LLNVSKNFHDNMLSRVLRAPLYFF 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,335
Number of Sequences: 59808
Number of extensions: 386636
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)