Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20142
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      31   1.4  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
 Frame = +1

Query: 310 FKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLD------TDQT--FDAVIVEW 465
           F K+I KE D+   N K    Q V+ +  MH  +   L+D      TD    F     + 
Sbjct: 276 FPKMIKKEADIGPENKKEDETQDVSYN--MHSCIDPCLMDMKTNNHTDNAHQFKRQHPQI 333

Query: 466 MYS-----DLYSGFSTVFNFHLFGRHRW 534
            YS     DL +  S++ +FH+F  HRW
Sbjct: 334 TYSQSELMDLRNNSSSLTDFHIFCLHRW 361


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +1

Query: 322 INKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYSGFSTV 501
           I +   ++ T +KY     + +++L++     L+L   +  DAV++ W + DL   +  V
Sbjct: 4   IERTTSVNATKYKYF---RILDAVLLYWRFLDLILRYLRVLDAVLLYWRFLDLILRYLRV 60

Query: 502 FNFHLFG 522
            + H +G
Sbjct: 61  LDAHSYG 67


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 515  KWKLKTVENPEYKSLYIHSTI 453
            +WK K ++NP YK  ++H  I
Sbjct: 957  EWKPKQIDNPNYKGEWVHPEI 977


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,639,058
Number of Sequences: 59808
Number of extensions: 478646
Number of successful extensions: 1208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)