Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20139
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.082
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       33   0.33 
SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09)        33   0.33 
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)            30   2.3  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638  LRGLSMLLTHEAATWWQGVK-TTMNKWDHALTSLRGAF 528
            LR L + LT  A+ W+ G     +N WD ALT LR  F
Sbjct: 1230 LRALPLYLTGNASVWFNGHPGAALNTWDAALTQLRNHF 1267


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638  LRGLSMLLTHEAATWWQG-VKTTMNKWDHALTSLRGAF 528
            LR L + LT  A+ W+    +  +N WD ALT L+  F
Sbjct: 2538 LRALPLYLTGNASVWFNSHPRAALNTWDAALTQLKNHF 2575


>SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09)
          Length = 132

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638 LRGLSMLLTHEAATWWQG-VKTTMNKWDHALTSLRGAF 528
           LR L + LT  A+ W+    +  +N WD ALT L+  F
Sbjct: 36  LRALPLYLTGNASVWFNSHPRAALNTWDAALTQLKNHF 73


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638 LRGLSMLLTHEAATWWQG-VKTTMNKWDHALTSLRGAF 528
           LR L + LT  A+ W+    +   N WD ALT L+  F
Sbjct: 201 LRALPLYLTGNASVWFNSHPRAAFNTWDAALTQLKNHF 238


>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
          Length = 626

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638 LRGLSMLLTHEAATWWQG-VKTTMNKWDHALTSLRGAF 528
           LR L +  T  A+ W+    +  +N WD ALT L+  F
Sbjct: 135 LRALPLYHTGNASVWFNSHPRAALNTWDAALTQLKNHF 172


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 335  SHYHSELGRYKLRLIEYVKVVVLSRLFFLI--ALVGRRAYGPPVGEWLPL 192
            + YH+ + RY  R+  Y+   VL + +++I   +  RR      G WLP+
Sbjct: 1001 TRYHTRMSRYYTRMTRYLS-RVLQKYYYVIFFRMSNRRCKLTTSGPWLPV 1049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,839,580
Number of Sequences: 59808
Number of extensions: 498043
Number of successful extensions: 1151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)