Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20135
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                         92   3e-19
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    38   0.006
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_55182| Best HMM Match : T4_deiodinase (HMM E-Value=0)               29   4.5  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   4.5  
SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)         29   4.5  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 47/73 (64%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
 Frame = +2

Query: 296 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 466
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 467 DTGSSNLWVPSKK 505
           DTGSSNLWVPSKK
Sbjct: 61  DTGSSNLWVPSKK 73



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/54 (72%), Positives = 46/54 (85%)
 Frame = +1

Query: 499 QKVHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGGL 660
           +K  +TNIACLLH+KYDS KS TY  NGT+FAI+YGSGSLSGFLS D V+VGG+
Sbjct: 72  KKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTVSVGGI 125


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 323 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWV 493
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAV 66


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 284 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 400
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_55182| Best HMM Match : T4_deiodinase (HMM E-Value=0)
          Length = 446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 631 RGSRRGCRSRTVSRTGCHSRRTSWTCGCRTCCAANKRCWCSALFGRHPEVGGSGVEYHLE 452
           R  R     R +++ GC +RR SW        + ++RC  +A+  R   VG S +   ++
Sbjct: 46  RSVRASSLLRQLAKGGCAARRLSWV---TPGFSQSRRCKTTAMLFRGGSVGKSQISLPIQ 102

Query: 451 RL 446
           +L
Sbjct: 103 QL 104


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 272 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 388
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_28012| Best HMM Match : RNA_pol_Rpa43 (HMM E-Value=7.1e-08)
          Length = 242

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 487 LGAFQKVHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYG 606
           +G   K  Y +I CL+H  +++  +K+  +NG   ++  G
Sbjct: 109 IGVVNKFGYDHIGCLVHGCFNASIAKSRTSNGLYGSLSLG 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,387,449
Number of Sequences: 59808
Number of extensions: 434410
Number of successful extensions: 1489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)