Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20127
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027) 38 0.006
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 38 0.011
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11) 36 0.025
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) 34 0.13
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5) 32 0.41
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3) 31 1.3
SB_36367| Best HMM Match : UVR (HMM E-Value=1.2) 30 2.2
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 29 2.9
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3) 29 2.9
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6) 29 5.1
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 28 6.7
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_53432| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 28 6.7
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 51.2 bits (117), Expect = 8e-07
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Frame = +2
Query: 272 FLNGDTATCLYNSPHEDDSLPRVL---PGRLLTLDAQCRKDRGTSACFKD-----ERVCA 427
FL D + CL + P + PGRL D QC+ G A F ++VC
Sbjct: 957 FLASDDSKCLDDQPTRRSLISTAALDNPGRLYDKDQQCQLAYGQEAKFCSGAKFLDQVCV 1016
Query: 428 QLFC-FDAGSGYC-VAYRPAAEGSPCGDGSTASTASV 532
+L+C AGSG C A PA +G+ CG+G + S + V
Sbjct: 1017 KLWCEVPAGSGQCKTAQVPATDGTSCGEGKSCSISEV 1053
>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 290 ATCLYNSPHEDDSLPR--VLPGRLLTLDAQCRK--DRGTSACFKDERV-CAQLFCFDAGS 454
++CL +SP + LP LPG++ D QC+ T C E V C QL+C
Sbjct: 119 SSCLNDSPVKLAPLPTNTQLPGQIYDRDEQCKMMIPGSTGFCTSKESVICTQLWCTKTDL 178
Query: 455 GYCVAYRPAAEGSPCG 502
PA +G+ CG
Sbjct: 179 SCTTKVEPAVDGTICG 194
>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
Length = 384
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = +2
Query: 296 CLYNSPHEDDSLPRVLPGRLLTLDAQCRKDRGTS--ACFKDERVCAQLFCFDAGSGYCVA 469
C N P + +LP + PG D QCR G C C LFC S
Sbjct: 31 CYDNRPPTNITLPSLPPGHEFDGDEQCRIVYGQEYKLCSVTTGNCGTLFCMRGSSCVNTR 90
Query: 470 YRPAAEGSPCG 502
P +G+PCG
Sbjct: 91 GMPPVDGTPCG 101
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 239 MVAVQLQSFHHFLNGDTATCLYNSPHEDD-SLPRVLPGRLLTLDAQCRKDRGTSACFKDE 415
++ L+ F L ++CLY E +LP L G + D QCR G A D+
Sbjct: 107 VIRPNLKGFMQGLLSKDSSCLYRHALEKTIALPTDLAGVTYSADDQCRLQYGNRAKHCDK 166
Query: 416 RVCAQLFCFDAGSGYCVAYR 475
VC +++ +G + V R
Sbjct: 167 TVCVKIYGVQSGGSHSVGPR 186
>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 257 QSFHHFLNGDTATCLYNSPHE---DDSLPRVLPGRLLTLDAQCRKDRGTSACFKDERVCA 427
+S FL+G +++CL + P + L R LPG++ D QC+ + G + + C
Sbjct: 382 ESIQKFLSGPSSSCLDDKPGSIVHEPYLFRKLPGQIYNRDVQCKLNYG-----PEYKHCK 436
Query: 428 QLFCFDAGSGYCVAYRPAAEGSPCGD 505
Q D G+ P +G+ CGD
Sbjct: 437 QK--LDNGATCVSRVSPPVDGTKCGD 460
>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
Length = 1068
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 275 LNGDTATCLYNSP----HEDDSLPRVLPGRLLTLDAQCRKDRGTS--ACFKDERVCAQLF 436
+ GD T L ++P H S LPG++ + QC+ G++ C + + C LF
Sbjct: 266 VTGDLCTELDDAPGNIVHYPSSWHDKLPGQIYDRNKQCQMQYGSAYTECAQKKSSCDSLF 325
Query: 437 CFDAGSGYCVAYRPAAEGSPCGD 505
C GS +G+ CGD
Sbjct: 326 CSSDGSTCPSTVLAPLDGTSCGD 348
>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
Length = 656
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 338 VLPGRLLTLDAQCRKDRGTSA--CFKDERVCAQLFCFDAGSGYCVAYR-PAAEGSPCG 502
+LPG++ QCR G C + + C LFC G CV++R P +G+ CG
Sbjct: 475 MLPGQVYDAATQCRMQYGPGYYHCKQLQSNCGSLFCSRNGV-QCVSFRAPPMDGTRCG 531
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 72 GFSGIIVAAHEVGHLLGAVHDXXXXXXXXXXXXAEKCRWEDGFIMSD-LRHTEKGFRWSP 248
G ++ HE+GH LG HD E+C ++ F+MS + ++ WSP
Sbjct: 336 GLGTALLITHEIGHTLGVRHD----------GGREECP-DESFLMSTAVPGGKRAQSWSP 384
Query: 249 CSCRVFTTF 275
CS R F
Sbjct: 385 CSRRDLQEF 393
>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
Length = 665
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 551 IFSCSVIHWPLMQYFRPRMASPRRRVGTPRSTRYPRRNRTAERTLA 414
+FS SV WPL P + S +RR + +R RT ++++A
Sbjct: 533 VFSSSVAPWPLSSTSVPEVTSRKRRRSQKINEEKTKRRRTGDKSIA 578
>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 485 RRRVGTPRSTRYPRRNRTAERTLAHP*NTHWCLCPSGTER 366
+R +G P + R PR +RTL P N PSGT+R
Sbjct: 307 QRTLGDPENPREPREPSETQRTLGDPENLRKPREPSGTQR 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 503 PRMASPRRR-VGTPRSTRYPRRNRTAERTLAHP*NTHWCLCPSGTER 366
PR S +R +G P + R PR +RTL P N PS TER
Sbjct: 319 PREPSETQRTLGDPENLRKPREPSGTQRTLGDPENPREPREPSETER 365
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = -2
Query: 506 RPRMAS-PRRRVGTPRSTRYPRRNRTAERTLAHP*NTHWCLCPSGTERPG*GDDQATLAA 330
+PR S +R +G P + R PR ERTL P N P P G + +
Sbjct: 337 KPREPSGTQRTLGDPENPREPREPSETERTLRDPENLRKPREPREPREPS-GIQRTLGSP 395
Query: 329 KSHLHAESCIGKSPCPHLKSGENSATARRPSETLLS 222
++ + +GK P + + E LLS
Sbjct: 396 ENPSVTQRTLGKPGNPREPTEPSGTQRNEAQEPLLS 431
>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
Length = 166
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 72 GFSGIIVAAHEVGHLLGAVHDXXXXXXXXXXXXAEKCRWEDGFIMSD-LRHTEKGFRWSP 248
G ++ HE+GH LG HD E+C ++ F+MS + ++ WSP
Sbjct: 22 GLGTALLITHEIGHTLGVRHD----------GGREECP-DESFLMSTAVPGGKRAQSWSP 70
Query: 249 CSCRVFTTF 275
CS R F
Sbjct: 71 CSRRDLQEF 79
>SB_36367| Best HMM Match : UVR (HMM E-Value=1.2)
Length = 169
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -2
Query: 350 DQATLAAKSHLHAESCIGKSPCPHLKSGENSATARRPSETLLSVSQIRHDEAVFPSALLG 171
DQ +H +C+ CP +GENSATA +E + + L+G
Sbjct: 95 DQIKKLPSKLVHQAACVKLISCPFSSTGENSATAAPLTEHTFEIYIVAESFLSGKRLLIG 154
Query: 170 S 168
S
Sbjct: 155 S 155
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 341 LPGRLLTLDAQCRKDRG--TSACFKDERVCAQLFCFDAGSGYCVAYRPAAEGSPCG 502
LPG + D QCR G +S C C L+C G AA+G+ CG
Sbjct: 400 LPGTVYDADHQCRLQYGSNSSQCTGMSDPCGTLWC-KVGKACQSKLEQAADGTYCG 454
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 18 VNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHD 134
VN S + ED+G S AHE+GH G +HD
Sbjct: 314 VNGMCTSTKSCNVNEDSG-LSVAYTIAHEIGHNFGMLHD 351
>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
Length = 347
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 551 IFSCSVIHWPLMQYFRPRMASPRRRVGTPRSTRYPRRNRTAER 423
+FS SV WPL P + S +RR + +R RT ++
Sbjct: 300 VFSSSVAPWPLSSTSVPEVTSRKRRRSQKINEEKTKRRRTGDK 342
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/104 (25%), Positives = 43/104 (41%)
Frame = -2
Query: 470 TPRSTRYPRRNRTAERTLAHP*NTHWCLCPSGTERPG*GDDQATLAAKSHLHAESCIGKS 291
+P+ST P TAE T+A P T + P T P + T+A +S + + I
Sbjct: 2392 SPKSTEVPPTTMTAESTVA-PGTT---MAPESTVTP-----ETTMAPESTVATGTTIAPE 2442
Query: 290 PCPHLKSGENSATARRPSETLLSVSQIRHDEAVFPSALLGSWTT 159
L++ T P T+ S S + + + P + TT
Sbjct: 2443 TTLALETTTAPETTLPPETTMASESTLAPESTLAPETTMVPGTT 2486
>SB_36040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 139 LPSWTAPNKCPTS*AATMI-PEKPPVS 62
+P WTAP P S I PE PPVS
Sbjct: 9 IPLWTAPESPPVSDPPLWIAPESPPVS 35
>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
Length = 288
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +3
Query: 393 PVRVSRMSECALSCSVSTRVAGTAWRTDPPPRARHAGTEVLHQRPVYN*TREYHSGLFSA 572
P + E +V+ R G W D G V + RP Y + Y +G FS
Sbjct: 85 PETIGVTKETTACVNVNNRNNGCFWSIDMCVEMCSGGYYVYYLRPPYGCSMAYCAGRFSG 144
Query: 573 HAQL 584
H L
Sbjct: 145 HQLL 148
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 28.3 bits (60), Expect = 6.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 186 WEDGFIMSDLRHTEKGFRWS 245
W D ++ SD+ + G+RWS
Sbjct: 777 WHDNYLCSDINKADPGWRWS 796
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 551 IFSCSVIHWPLMQYFRPRMASPRRRVGTPRSTRYPRRNRTAER 423
+FS SV WPL P+ S +RR + +R RT ++
Sbjct: 881 VFSRSVAPWPLSSTSVPQATSHKRRRSQKINEEKTKRRRTGDK 923
>SB_53432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 72 GFSGIIVAAHEVGHLLGAVHDXXXXXXXXXXXXAEKCRWEDGFIMSDLRHTEKGFRWSPC 251
G I+ AHE+ H LG HD CR + + + K +++SPC
Sbjct: 21 GIQASIIVAHEIAHTLGVGHD--------GASSRPDCRNGQYIMGTSVSGGGKAYKFSPC 72
Query: 252 S 254
S
Sbjct: 73 S 73
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Frame = +3
Query: 201 IMSDLRHTEKGFRWSPCSCRVFTTF*MGTRRLAYTTLRMKMTLCRECCLVVSLPWTLSAG 380
I DL H G+ W+ C+C TF +G + L ++ L C +++
Sbjct: 35 ITIDLPHYHNGYHWARCTC---VTFLIGNTSKSLGDLTSRIMLMTTPC----EDKAVTSP 87
Query: 381 RTEAPVRVSRMSECALSCSVS------TRVAGTAWRT 473
A VS E + C +V+G AW T
Sbjct: 88 SLNAVDHVSTQGERCVGCEAKIVDRYLVKVSGRAWHT 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,741,633
Number of Sequences: 59808
Number of extensions: 561154
Number of successful extensions: 1621
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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