Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       28   5.6  
SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)                    28   7.4  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               27   9.8  

>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 487 VGPLALS-PTATYSPVLSPLSRHSQEEMGWMYYSPTFLVKYISTLTRT 347
           + PL  S P+ + SPV SPL    ++++G     P+FL   +S L  T
Sbjct: 67  ISPLPTSTPSTSSSPVASPLDTILRDDLGVPLEIPSFLSPTLSPLPTT 114


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 341 LLNPVRNSMGCVSNSLLDLTGTVSGSKR 258
           L+NP ++ +G +S S+LD   T   +KR
Sbjct: 28  LINPTKSEIGKISKSILDRINTTIATKR 55


>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
          Length = 467

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 493 SGHGSYRIQERHHLP*DISSKYQLHSKTAAPPFKTE-CITVSRQ 621
           SGHG  R+ ER H   D     Q  S  AA P +T+    VSR+
Sbjct: 303 SGHGGERLAERRHNGRDRRRYGQPDSGDAARPLRTKSAAVVSRE 346


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 SGCRPRLSFWIHSPFPSNPTKSSKHNP 316
           S C PR S  + SP PS+P   S ++P
Sbjct: 203 STCSPRYSRILASPGPSSPASDSDNSP 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,502
Number of Sequences: 59808
Number of extensions: 394646
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)