Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20121
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 528  SRADRRSEWPSNTRRQQCAPVL--VNEFQLPTRILFFKLR 415
            +++ RR  WP  T  +   P+L   +  +LP R+L F+LR
Sbjct: 2553 TQSSRRRRWPPQTDHRPLVPLLSSTDLSKLPPRVLKFRLR 2592


>SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 444 PTRILFFKLRFCNIRVCTGVLQKYI 370
           P  I+ F L  C+I V  G+  KYI
Sbjct: 45  PMNIILFNLAICDITVAMGMTSKYI 69


>SB_18784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +1

Query: 76  SKKSTEKISVNNHHFTE---IIFHPISSHLISFQLINV 180
           SKK+TE+   N+H+F+E   I F  I+ H+ + Q ++V
Sbjct: 49  SKKTTEQGIQNHHYFSEAESISFSMITIHIFASQRLHV 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,316,827
Number of Sequences: 59808
Number of extensions: 367052
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)