Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20116
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             29   4.8  
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_50613| Best HMM Match : 7tm_1 (HMM E-Value=0.24)                    29   4.8  
SB_15913| Best HMM Match : zf-B_box (HMM E-Value=5.4e-11)              29   4.8  
SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)               29   4.8  
SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)               28   8.4  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 462 NEDKVSEISSTPRA*RHLRPLISCSIMKIASCTC 361
           N+ KV   + TP + R L P+ S  I+K+A  TC
Sbjct: 777 NKKKVFRYTGTPNSYRLLTPIHSARIIKVAPLTC 810


>SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 526 APKTNCYGRLC---ILQGLSN-EANCKTDEPLNSLCRCAIRALETLL 654
           AP T+   R+C   +LQG  N   N +  +PL S CR A  AL  +L
Sbjct: 52  APSTDISERICCTTLLQGYPNPRINGEDGDPLESTCRHASLALAVVL 98


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 277 CLGQNHDGACTKSSPSSPNCCLG-TKSQNSVMAFR 176
           C G   DG CT+S+P SP    G TK+    M  +
Sbjct: 260 CYGAIEDGLCTESTPISPLTLYGKTKANGEEMVLQ 294


>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 163 GCTDCWQTICEA-ICSLYSMRVT 98
           GCTDC + +CEA I S   MR T
Sbjct: 108 GCTDCGELVCEACIASHKRMRAT 130


>SB_50613| Best HMM Match : 7tm_1 (HMM E-Value=0.24)
          Length = 273

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 33  SSVKAGRRIFCPAVWNSNSPVNVTLMLY 116
           S++ AG +IF PA W     V +TL L+
Sbjct: 116 SALMAGAKIFLPASWTIVETVRITLSLF 143


>SB_15913| Best HMM Match : zf-B_box (HMM E-Value=5.4e-11)
          Length = 116

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 163 GCTDCWQTICEA-ICSLYSMRVT 98
           GCTDC + +CEA I S   MR T
Sbjct: 21  GCTDCGELVCEACIASHKRMRAT 43


>SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 163 GCTDCWQTICEA-ICSLYSMRVT 98
           GCTDC + +CEA I S   MR T
Sbjct: 21  GCTDCGELVCEACIASHKRMRAT 43


>SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 659 PGRSVSSALIAHRQREFRGSSVLQFASLLSPC 564
           PG SVS++L++HR  +  G+      SLLS C
Sbjct: 224 PGGSVSTSLLSHRSADIYGNG-FDNVSLLSVC 254


>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 163 GCTDCWQTICEAICSLYS-MRVT 98
           GCTDC + +CEA  + +  MR T
Sbjct: 108 GCTDCGELVCEACIACHKRMRAT 130


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 279 RWTPYKAMAKVFAPSKLFRPT 341
           RW P+ A   VF P KL +PT
Sbjct: 490 RWRPWYANFMVFVPEKLSKPT 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,119,169
Number of Sequences: 59808
Number of extensions: 519987
Number of successful extensions: 1387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)