Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20109
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 33 0.17
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 2.1
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 3.7
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 4.9
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9) 28 4.9
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 6.5
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 6.5
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 27 8.6
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 27 8.6
SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 78.6 bits (185), Expect = 4e-15
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +3
Query: 297 PISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKG 443
P+ F LEF+F PN +FTNTVLTK Y MKC+PDE+ P FEGPEI S G
Sbjct: 292 PMGFVLEFHFTPNPFFTNTVLTKSYKMKCEPDEDDPFSFEGPEIVSTSG 340
Score = 67.7 bits (158), Expect = 7e-12
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Frame = +1
Query: 1 RHEVNGTYEPNDDECLNPW----RDDTEEEELARAVQNAAIT-EGEEK---KDDKAIEPP 156
R+ +G EP D+EC P D+ EE+E A + + ++ E EEK D++ IE
Sbjct: 172 RNIASGGVEPTDEECRWPSDAEDEDEAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIETE 231
Query: 157 MDP-NVKGIPDFWYNIFRNVSMLSEMMQEHDEPI 255
P + KGIP+FW +NV +LSEM+QEHDEPI
Sbjct: 232 QLPEDTKGIPEFWLTAMKNVELLSEMIQEHDEPI 265
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 55 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG-IPDFWYNIFRNVSMLSEM 231
+R ++EE A QN+ I + + D I N+KG + D W I + S L +
Sbjct: 215 YRRSAKKEEQKEAAQNSKILALQSQVSDLGIAMEAGLNIKGEVTDGWNEIKKAASGLRYI 274
Query: 232 MQEHDEPI*NAC---KILKCKC 288
+ + DE N K +KC+C
Sbjct: 275 IFKMDEKKENVVFEKKKMKCEC 296
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 139 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 249
+ I+PP+ P K +PD ++ R + LS + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 109 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 210
+TE +E+K+DKA IE P + + ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 19 TYEPNDDECLNPWRDDTEEEEL 84
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 7 EVNGTYE-PNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 162
E +G YE P+DD+ ++P E+E+ A ++ + +EK+D+ +E D
Sbjct: 401 EDDGDYEEPDDDQPVHPSHYSVPEDEITSADEDED-DDKDEKEDEDELEEKED 452
>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 238
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP-DFWYNIFRNVSMLSEM 231
W+ E R ++NA + + K+ KA++P +D + P Y + + +EM
Sbjct: 38 WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEM 97
Query: 232 MQEH 243
+ H
Sbjct: 98 EKNH 101
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 22 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 117
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 285 MHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFE 416
+ +D ++ +EF F + +NT+L Y+M PD++ L E
Sbjct: 244 IEDDLVASVVEFLFTGVDAVSNTMLWALYMMGENPDKQYKLHHE 287
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 25 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAI 147
E DD+ W DD E+E+ +N ++KK K I
Sbjct: 1118 EDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLKQI 1158
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 64 DTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMM 234
+TEE E + ++ A +T+ E D +EP +D +K PD N++ + E M
Sbjct: 478 ETEENEDEKTLKGAPVTKDELTLKDLPLEPDVDIQLK--PDANMVHIGNIAHIVETM 532
>SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 549 WTDLVTVRTDPRDFASVSSLWS*QLRFYQHSS 454
WT V+ R D + WS QL +Y H S
Sbjct: 416 WTCTVSTRLDRHSQYYIGQTWSSQLHYYLHYS 447
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 7 EVNGTYE-PNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIE 150
E +G YE P+DD+ ++P E+E+ A ++ + +EK+D+ +E
Sbjct: 601 EDDGDYEEPDDDQPVHPSHYSVPEDEITSANEDED-DDKDEKEDEDELE 648
>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 70 EEEELARAVQNAAITEGEEKKDDKAIE 150
E+EE+ RAV+ + E E++K +KA E
Sbjct: 52 EQEEMERAVKESIRVEKEKRKAEKAAE 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,015
Number of Sequences: 59808
Number of extensions: 332799
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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