Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         30   1.8  
SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)                 29   4.2  
SB_47364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)                28   7.4  
SB_41207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 666

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 583 TMDLHQCRVYWLSFCRRYSVQKIPTRSPPWQSRLESSLAS**TFWMLSRHHSLID 747
           T ++ +CR+ WL    R   ++IP  S  W S  +  L    T W  +    L++
Sbjct: 578 TQEIKRCRLKWLGHVLRMGQERIPKTSALWTSIGKRKLGRPKTTWRRTIQAELLE 632


>SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)
          Length = 640

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 310 QRIYVLGRSLPVVVLAMSYVVLW 242
           Q+ YVLG  LP  + A+S  V W
Sbjct: 329 QKYYVLGYGLPTAITALSMAVFW 351


>SB_47364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 104 K*RMYSKTTGWALVALICSSTILQTIAYPQQLPLISQVTSNVRTHGPQYYI 256
           K +   + T + +V+L  +  ++  +A P  L  +    S + TH PQY I
Sbjct: 51  KIKRLQRVTNYYIVSLATADLLVTVLAMPMWLLYMLSDGSFIPTHSPQYLI 101


>SB_38803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 402 PILNFANIFRQRWRHGPQQKRHL 470
           P L   ++F   WRHG +++RH+
Sbjct: 45  PSLKLLSMFMWSWRHGSRKRRHI 67


>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
          Length = 266

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 353 MTFKLIQFPMDFHGQTSYPQFCKHFSSTVASRAP 454
           ++FK IQ P+D+  +++Y Q    FS   +S AP
Sbjct: 153 LSFKDIQEPLDYVSESNYGQQVSLFSKNPSSLAP 186


>SB_41207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 110 RMYSKTTGWALVALICSSTILQTIAYPQQLPLISQVTSNVRTHGPQYY 253
           + Y++  G+ LV    +STI  T A    LP+ S++   ++   PQ +
Sbjct: 109 KAYAEAAGFDLVISWWTSTITSTTAPSSILPVFSELNKQLQGEEPQIH 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,923,200
Number of Sequences: 59808
Number of extensions: 523401
Number of successful extensions: 1430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)