Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20095
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16876| Best HMM Match : Hydrolase (HMM E-Value=1.8e-06)             73   3e-13
SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)                   73   3e-13
SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_50143| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    36   0.044
SB_35679| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_2379| Best HMM Match : Sulfatase (HMM E-Value=0.00017)              32   0.41 
SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)             30   2.2  
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)                      29   3.8  
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)                  28   8.8  
SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)                  28   8.8  

>SB_16876| Best HMM Match : Hydrolase (HMM E-Value=1.8e-06)
          Length = 595

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
 Frame = +2

Query: 509 TGMYVHNHKTVNNSLHGGCYGENWKY-HEKQTFATILQEAGYDTFYAG 649
           TGMYVHNHKT+NNS++G C  +NW+   EKQTF T L+E GY T+YAG
Sbjct: 369 TGMYVHNHKTLNNSVNGNCASKNWQQGPEKQTFNTYLKELGYKTYYAG 416



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 646 GEYLNQYGTKEAGGPEVVPPGWTEW 720
           G+YLN+YG    GG + VPPGW  W
Sbjct: 416 GKYLNKYGMSATGGTQYVPPGWDSW 440



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/58 (44%), Positives = 31/58 (53%)
 Frame = +3

Query: 336 AELKRPNFVLILTDDQDVVLGGMDPMTNVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           AE  + N VL+LTDDQD VLG M                    +V SP+CCPSRAS+L
Sbjct: 331 AEGTQSNIVLVLTDDQDQVLGSM--------------------FVASPLCCPSRASIL 368


>SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 485

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
 Frame = +2

Query: 509 TGMYVHNHKTVNNSLHGGCYGENWKY-HEKQTFATILQEAGYDTFYAG 649
           TGMYVHNHKT+NNS++G C  +NW+   EKQTF T L+E GY T+YAG
Sbjct: 66  TGMYVHNHKTLNNSVNGNCASKNWQQGPEKQTFNTYLKELGYKTYYAG 113



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 32/82 (39%), Positives = 41/82 (50%)
 Frame = +3

Query: 264 LILFFK*RTMLQYLFLIFFVNNAVAELKRPNFVLILTDDQDVVLGGMDPMTNVQRFIGKE 443
           LIL  + + +L     +F V    AE  + N VL+LTDDQD VLG M             
Sbjct: 5   LILLLRHKILLLVAAAVFSVLGD-AEGTQSNIVLVLTDDQDQVLGSM------------- 50

Query: 444 GITFTNSYVTSPICCPSRASLL 509
                  +V SP+CCPSRAS+L
Sbjct: 51  -------FVASPLCCPSRASIL 65



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 646 GEYLNQYGTKEAGGPEVVPPGWTEW 720
           G+YLN+YG    GG + VPPGW  W
Sbjct: 113 GKYLNKYGMSATGGTQYVPPGWDSW 137


>SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = +3

Query: 345 KRPNFVLILTDDQDVVLGGMDPMTNVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           ++PN + I+TDDQD  LG MD M N  R I K G  F N++VTSPICCPSR+S+L
Sbjct: 96  RKPNIIFIMTDDQDTELGSMDVM-NKTREIFKGGTHFVNAFVTSPICCPSRSSIL 149



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 497 SQFATGMYVHNHKTVNNSLHGGCYGENWKY-HEKQTFATILQEAGYDTFYAGN 652
           S   TGMY HNH  + N+++  C   +W+   EK+ FA  + EAGY T   G+
Sbjct: 146 SSILTGMYAHNHNVLTNNVN--CSSLSWRRGPEKRNFARYVAEAGYQTGTPGD 196


>SB_50143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 345 KRPNFVLILTDD---QDVVLGGMDPM-TNVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           K+P+ ++I+ DD    DV   G   + T    F    G+   N YV SP+C PSRAS++
Sbjct: 25  KKPHIIIIVADDLGWDDVSFHGSPQIPTPYIDFYANRGVILNNYYV-SPMCTPSRASMM 82


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 300 YLFLIFFVNNAVAEL-KRPNFVLILTDD---QDVVLGGMDPMTNVQ-RFIGKEGITFTNS 464
           Y+F +  + +++A   K+PN ++ + DD    D+   G D +       I  EG   T++
Sbjct: 463 YVFALLVIFSSLASSQKKPNILIFIVDDLGYADLGCFGNDSLATPHIDKIATEGAKLTHN 522

Query: 465 YVTSPICCPSRASLL 509
                IC PSRA+LL
Sbjct: 523 LAGESICTPSRAALL 537



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 345 KRPNFVLILTDD---QDVVLGGMDPMTNVQ-RFIGKEGITFTNSYVTSPICCPSRASLL 509
           +RPN V++L DD    D+   G D +       + +EG    ++   +PIC PSRA+ +
Sbjct: 28  QRPNIVILLVDDLGIADIGCFGNDTIRTPHIDKLAREGAALRHNLSPAPICTPSRAAFM 86


>SB_35679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 300 YLFLIFFVNNAVAELKRPNFVLILTDD---QDVVLGGMDPMT--NVQRFIGKEGITFTNS 464
           Y+F+   +  A    K P+ V I  DD    DV    +  +   N+ R  G EG+   N 
Sbjct: 6   YVFVASMLT-ACHAAKPPHIVFIFVDDLGWSDVGYHNITDLKTPNIDRLAG-EGVVLENY 63

Query: 465 YVTSPICCPSRASLL 509
           YV  PIC P+R + L
Sbjct: 64  YV-QPICTPARGTFL 77


>SB_2379| Best HMM Match : Sulfatase (HMM E-Value=0.00017)
          Length = 301

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 IGKEGITFTNSYVTSPICCPSRASLL 509
           +  EG+   NSY  SPIC P+RASL+
Sbjct: 125 LASEGVIL-NSYYVSPICTPTRASLM 149


>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
          Length = 473

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +3

Query: 345 KRPNFVLILTDD---QDVVLGGMDPMT--NVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           K P+ +L++ DD    DV    +  +   N+ R +  +G    N YV  PIC P+R++LL
Sbjct: 20  KSPHILLVVVDDLGWSDVGYHNITDLKTPNIDR-LAAQGTILENYYV-QPICSPTRSALL 77


>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 528

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 GVVAFVKDFYYDPFKW 163
           G+ +F+ DFY DP KW
Sbjct: 17  GITSFIMDFYRDPTKW 32


>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 339 ELKRPNFVLILTDDQDVVLGGMDP---MTNVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           E + PN +LI+ DD    LG        T     +    + FT S     +C PSR S L
Sbjct: 741 ESRPPNVLLIIADDLRASLGCYGHRFIQTPYLDSLAVRSVRFTTSASQIAVCAPSRTSFL 800

Query: 510 QACTFTTTRP*TI 548
                T+ RP T+
Sbjct: 801 -----TSRRPDTL 808


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 292 IVLYLKNNINKILMWHSGHD---LEARTLACDNNAYCEK 185
           +V Y+K N NK+L+   G+D   LEAR     NN  C+K
Sbjct: 395 VVQYIKENKNKVLIILDGYDELPLEARESI--NNVVCKK 431


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 345 KRPNFVLILTDD---QDVVLGGMD--PMTNVQRFIGKEGITFTNSYVTSPICCPSRASLL 509
           K P+ ++++ DD    D+   G    P  N+   +   G+   N YV SP+  PSRAS +
Sbjct: 148 KPPHIIMVVADDLGWDDISFHGSPQIPTPNLDA-LANSGVILNNYYV-SPMDTPSRASFM 205


>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 467 IRVSECYAFFPDKSLNIRHRIHST*NYILIVGQYENKVWSF*FSHSV 327
           ++V E  A  PD  LN+ H       Y+  +  YEN +  F   HSV
Sbjct: 590 LQVREATADVPDVWLNLAHIYVEQKQYVSAIQMYENCLRKFFKHHSV 636


>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
          Length = 864

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -1

Query: 661 DSNIPRIERVISGFLKYSSERLFLVIFPVLSIASAVKTIVHGLVVVNVHACSKLARLGQH 482
           D+  P  ER+ + F KY      + +    +IA+ V ++   L  V    C+ L  +G+ 
Sbjct: 158 DNQKPLRERIKAIFKKYGFTVTAIGLAVATTIAAIVTSLGKSLSSVARGVCNGLKAIGKK 217

Query: 481 IGDVT*ELVNVMPSF 437
           +G++   LV  + +F
Sbjct: 218 LGELLPGLVGSIANF 232


>SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)
          Length = 756

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -1

Query: 661 DSNIPRIERVISGFLKYSSERLFLVIFPVLSIASAVKTIVHGLVVVNVHACSKLARLGQH 482
           D+  P  ER+ + F KY      + +    +IA+ V ++   L  V    C+ L  +G+ 
Sbjct: 212 DNQKPLRERIKAIFKKYGFTVTAIGLAVATTIAAIVTSLGKSLSSVARGVCNGLKAIGKK 271

Query: 481 IGDVT*ELVNVMPSF 437
           +G++   LV  + +F
Sbjct: 272 LGELLPGLVGSIANF 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,462,212
Number of Sequences: 59808
Number of extensions: 506280
Number of successful extensions: 1325
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)