Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20075
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.100
SB_13378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0) 31 0.93
SB_51256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_32088| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 4.9
SB_15913| Best HMM Match : zf-B_box (HMM E-Value=5.4e-11) 29 4.9
SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11) 29 4.9
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073) 28 8.6
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 28 8.6
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 34.3 bits (75), Expect = 0.100
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 698 IAWASLSATNEDKVSEISSTPRA*RHLRPLISCSIMKIASCTC 570
I W + N+ KV + TP + R L P+ S I+K+A TC
Sbjct: 768 ITWKTYPDDNKKKVFRYTGTPNSYRLLTPIHSARIIKVAPLTC 810
>SB_13378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = -2
Query: 585 SFVHLFSWHELGVGRKSFDGAKT-LAMLCKVSTCAWAKTTMVACTKSSPSSPNCCLGTKS 409
++VH+F E G G + + +K ++ + + + K T + C + CC G S
Sbjct: 76 TYVHMF---ESGTGSEGYKNSKRGSSVAAQQAALSLVKVTQICCAFNFKEFDQCCHGDGS 132
Query: 408 QNSVMA-FRLSVCGCTDCW--QTICEAICSLYSMRVT 307
Q ++A +D W Q C + + Y VT
Sbjct: 133 QQYLLASAEKDETSSSDTWSNQPYCLEMTAFYRQTVT 169
>SB_47389| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 341
Score = 31.1 bits (67), Expect = 0.93
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = -2
Query: 633 RLKALEAVDQLQHHEDSFVHLFSWHELGVGRKSFDGAKTLAMLCKVSTCAWAKTTMVACT 454
R++ E H S S HE R+S AKT+A++ W T+V+C
Sbjct: 226 RIRGHEYSTDYNGHALSTNGTMSGHERKSIRRSIKAAKTIAIIVSAFLLCWMPYTLVSC- 284
Query: 453 KSSPSSPNCCLGTKSQ 406
+S P C T S+
Sbjct: 285 -ASVICPPCFHRTPSE 299
>SB_51256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 710 SGTCIAWASLSATNEDKVSEISS-TPRA*RHLRPLISCSIMKIASCT 573
SG+ W L +N+ V I + TP H+ L C I ++ +CT
Sbjct: 106 SGSIAQWYGLRFSNKRPVVRIQTYTPMTPNHITTLYPCMIKRLPTCT 152
>SB_32088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 710 SGTCIAWASLSATNEDKVSEISS-TPRA*RHLRPLISCSIMKIASCT 573
SG+ W L +N+ V I + TP H+ L C I ++ +CT
Sbjct: 106 SGSIAQWYGLRFSNKRPVVRIQTYTPMTPNHITTLYPCMIKRLPTCT 152
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -2
Query: 558 ELGVGRKSFDGAKTLAMLCKV-STCAWAKTTMVACTKSSPSSPNCCLGTKSQN-SVMAFR 385
E G+G D ++C S C TT+++ S + C LG S S+ A +
Sbjct: 255 EKGLGESGHDNKAVKFIMCNYDSDCRDNVTTILSVKTSFDKADQCMLGVSSNTLSITAMQ 314
Query: 384 LSVCGCTDC 358
+++ G C
Sbjct: 315 IAIYGKNFC 323
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +3
Query: 168 TMQPSLRGLKACT-NLRWSDFTVQP-KSSVKPAGEYSVRPCG---TPIVRST 308
T++P L+ C LR +T++P + +++P Y++RPCG P+VR+T
Sbjct: 292 TLRPCRYTLRPCRYTLRPRRYTLRPCRYTLRPC-RYTLRPCGYTLRPVVRNT 342
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 372 GCTDCWQTICEA-ICSLYSMRVT 307
GCTDC + +CEA I S MR T
Sbjct: 108 GCTDCGELVCEACIASHKRMRAT 130
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 465 PSWFWP-KHRWTPYKAWPKSSLRRSSFDQLPTR 560
P FWP KHR P K WP ++ ++ + P +
Sbjct: 70 PRKFWPPKHRALPRKFWPSKNIALTTENLAPKK 102
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 474 FWP-KHRWTPYKAWPKSSL 527
FWP KHR P K WPK +
Sbjct: 121 FWPQKHRALPRKFWPKKQI 139
>SB_15913| Best HMM Match : zf-B_box (HMM E-Value=5.4e-11)
Length = 116
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 372 GCTDCWQTICEA-ICSLYSMRVT 307
GCTDC + +CEA I S MR T
Sbjct: 21 GCTDCGELVCEACIASHKRMRAT 43
>SB_6523| Best HMM Match : zf-B_box (HMM E-Value=4.4e-11)
Length = 275
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 372 GCTDCWQTICEA-ICSLYSMRVT 307
GCTDC + +CEA I S MR T
Sbjct: 21 GCTDCGELVCEACIASHKRMRAT 43
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 493 GHLTKHGQSLRSVEALSTNSQLVPTEQVHEAIFMMLQ 603
GH ++ +SL S A++ N + + T ++H++ +L+
Sbjct: 658 GHASEQKESLASNRAITKNGRFINTPKIHKSAMTLLR 694
>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 478 GPSTGGHLTKHGQSLRSVEALSTNSQLVPTE 570
GP+ H+TKH + + + L N +L+P E
Sbjct: 353 GPARMEHVTKHRRMIEIEQILEQNGKLIPQE 383
>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
Length = 1387
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 525 AKTLAMLCKVSTCAWAKTTMVACTKSSPSSPNCCLGTKSQNSV 397
A L LC STCA T V+ + +P LG K++ +V
Sbjct: 676 ATRLRTLCAYSTCARTHTMSVSDKLNPQRTPRIPLGLKAERTV 718
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 372 GCTDCWQTICEAICSLYS-MRVT 307
GCTDC + +CEA + + MR T
Sbjct: 108 GCTDCGELVCEACIACHKRMRAT 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,105,375
Number of Sequences: 59808
Number of extensions: 523144
Number of successful extensions: 1570
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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