Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20060
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 103 9e-23
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.77
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 30 1.0
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 30 1.4
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.8
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.8
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3) 28 4.1
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 28 4.1
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.4
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 7.2
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034) 27 7.2
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 27 9.5
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 103 bits (247), Expect = 9e-23
Identities = 46/60 (76%), Positives = 51/60 (85%)
Frame = +3
Query: 75 QFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 254
+FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGKTGRVYNVT ALGV+VN
Sbjct: 440 KFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGKTGRVYNVTKRALGVVVN 499
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 MTNSKGYXXGTRDLFARSSAH 87
MTN+KGY GTR +F++ H
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRH 443
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.77
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 335 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 484
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 221 RDCSCSRCDCQQRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 367
RDC+CS+C R R+ R+ I + K ++ R+ + +R EN RL
Sbjct: 44 RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 385 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANTLLTITPRA*AVTLYT 212
S+ F + I D+LK L + + TD++ + +YN + +TLL + T+
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286
Query: 211 RPVFPWY 191
RP PW+
Sbjct: 287 RPRLPWF 293
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 398 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 490
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 281 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 397
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 281 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 460
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 281 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 460
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 461 PVLLAPIPYEF 493
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
Length = 218
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 92 NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQRV 262
N A+ + ESV+SWR R++ + + + P DRS +V RCD Q
Sbjct: 85 NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143
Query: 263 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 376
R +P+ + V + S+ R+ + V R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 197 WKDRSRVQRDCSCSRCDCQQRVRG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 370
WK++ ++ + C Q+ + + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 161 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 256
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 137 HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDCQQRVRGRIIPKRINI 295
HC RH ++ + AT+ +PW KD S R C + C C + R++I
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFCVNEYGVYMSASRVDI 1330
>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
Length = 1021
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 164 SSKGYATQSIPWKDRSRVQRDCSCSRCDCQQRVRGRIIPKRINIRVEHVKHSK 322
S K S WK+ +++++ C QQRV I +R+ + H K S+
Sbjct: 380 SEKSQKVHSANWKEEIQLRKELDCLNKQEQQRVSRISIEQRLAVDRFHRKLSR 432
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 303 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 437
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 158 WCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQRVRGRIIPKRINIRVEHVKHSKCRQDF 337
WC ++ Y ++ + R+ +D S + + QRV +P N+R+ + QD
Sbjct: 106 WCGARTYNKRASTLSTQPRLYQDSSKEQTEQHQRVGAEPVP-TTNVRLTLSTQPRLYQDP 164
Query: 338 LKRVKENER 364
K E +
Sbjct: 165 SKEQTEQHQ 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,491
Number of Sequences: 59808
Number of extensions: 356162
Number of successful extensions: 1107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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