Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20056
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 210 7e-55
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 2e-30
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 124 6e-29
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 107 9e-24
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 101 6e-22
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 1e-08
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 7e-04
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.00
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 2.3
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 30 2.3
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 3.0
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.0
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.3
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 9.3
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.3
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 210 bits (514), Expect = 7e-55
Identities = 122/228 (53%), Positives = 141/228 (61%), Gaps = 2/228 (0%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 252 MTP-TTQYSMPNVSSDVSSKMLLCKPT*STGLSSCQ*WRQT*DQGSI*G*RQNLFPRGSQ 428
M P T + + ++ + + + Q G +++ FP
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 429 FHGAYENEGNCRSLSWQNCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 608
+ + + + AYF+DSQRQATKDAGTI+GLNVLRIINEPTAAA
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 609 IAYGLDKKGTGERNVLIFDLGGGTSTCPSLP-SRRYLRGEIHRGDTHL 749
IAYGLDKK ERNVLI+DLGGGT L + GDTHL
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFEVKSTAGDTHL 228
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +1
Query: 343 FRVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
F V+ +G +PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +AV+TVP
Sbjct: 92 FHVIREGERPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEL 352
+P NT+FDAKRLIGRKF+D V DM HWPF +
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHV 94
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 130 bits (313), Expect = 2e-30
Identities = 59/64 (92%), Positives = 61/64 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 252 MTPT 263
M PT
Sbjct: 61 MNPT 64
Score = 109 bits (262), Expect = 2e-24
Identities = 59/81 (72%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTSTC 689
AYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLGGGT
Sbjct: 241 AYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFDV 300
Query: 690 PSLP-SRRYLRGEIHRGDTHL 749
L + GDTHL
Sbjct: 301 SVLSIEDGIFEVKSTHGDTHL 321
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = +1
Query: 340 AFRVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
A VV++ G+PK+KV YKGE KTFF EE+SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 116 AEEVVNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFELSVMEANLRSR*HIRVKTKPF 412
+P NTIFDAKRLIGR+F+D V+ DMKHW FE+ + + + +TK F
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTF 114
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +1
Query: 421 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
++SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 510 AYFNDSQRQATKDAG 554
AYFNDSQRQATKDAG
Sbjct: 173 AYFNDSQRQATKDAG 187
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 124 bits (300), Expect = 6e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 252 MTP 260
+ P
Sbjct: 61 LNP 63
Score = 109 bits (262), Expect = 2e-24
Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGT--S 683
AYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLGGGT
Sbjct: 148 AYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGTFDV 207
Query: 684 TCPSLPSRRYLRGEIHRGDTHL 749
+ ++ + GDTHL
Sbjct: 208 SILTIDDGSLFEVKSTAGDTHL 229
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = +1
Query: 343 FRVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
F+++SD KPKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+ V +AVITVP
Sbjct: 92 FKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/33 (72%), Positives = 31/33 (93%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEL 352
+P NTIFDAKRLIGR+++DATVQ+DMK WPF++
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKI 94
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 107 bits (257), Expect = 9e-24
Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 11/212 (5%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 252 MTP-TTQYSMPNVSSDVSSKMLLCKPT*STGLSSCQ*WRQT*DQ----GSI*G*RQNLFP 416
+ P T Y +K L + + +R T D+ G + G + N
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLE------IGKLYQFRVTTDKRGNAGFLVGKKGNFTV 143
Query: 417 RGSQFHGAYENEGNCRSLSWQNCA----ECSYHGSAYFNDSQRQATKDAGTISGLNVLRI 584
+ G Y + R+++ +N + A F+ QR AT A +++G+ VLR+
Sbjct: 144 ITPEEIGGYVIK-KLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRV 202
Query: 585 INEPTAAAIAYGLDKKGTGERNVLIFDLGGGT 680
INEPTAAA+AYGL KK G NV++ DLGGGT
Sbjct: 203 INEPTAAALAYGLHKK-EGVANVMVVDLGGGT 233
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 343 FRVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTS 519
FRV +D G V KG PEE+ V+ K++ AE L TV AV++VP
Sbjct: 121 FRVTTDKRGNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSVP-AE 179
Query: 520 MTLKDKPQKMQVPSLA 567
+K + ++ SLA
Sbjct: 180 FDIKQRNATVKAASLA 195
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKF 304
+P NTI+DAKR IG+ F
Sbjct: 91 NPKNTIYDAKRFIGKTF 107
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 101 bits (242), Expect = 6e-22
Identities = 52/81 (64%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTSTC 689
AYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLGGGT
Sbjct: 846 AYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGTFDV 904
Query: 690 PSLP-SRRYLRGEIHRGDTHL 749
L GDTHL
Sbjct: 905 SLLTIDNGVFEVVATNGDTHL 925
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMTP 260
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
Score = 74.5 bits (175), Expect = 8e-14
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +1
Query: 343 FRVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
F+VV KP ++V K E KTF EE+S+MVLTKMKETAEAYLGK V +AV+TVP
Sbjct: 790 FKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/51 (49%), Positives = 38/51 (74%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFELSVMEANLRSR*HIRVKTK 406
+P NT+FDAKRLIGR ++D +VQ D+K +PF+ V++ N + H++VK K
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFK--VVDKNKKP--HVQVKVK 806
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 57.6 bits (133), Expect = 1e-08
Identities = 40/73 (54%), Positives = 44/73 (60%), Gaps = 26/73 (35%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIAY 617
A+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIAY
Sbjct: 47 AHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAY 106
Query: 618 GLDKK--GTGERN 650
GLDK G ERN
Sbjct: 107 GLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +1
Query: 376 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 489 ECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 659
+C +Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 660 FDLG 671
D+G
Sbjct: 258 VDIG 261
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 245
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 376 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
I+V Y G+ + F PE+V +M+ T++K TAE L V + VI+VP
Sbjct: 160 IQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 263 NTIFDAKRLIGRKFEDATVQADMKHWPFEL 352
NTI KR IGRKF D VQ ++ H P+++
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKV 150
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +3
Query: 513 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGT 680
+FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G +
Sbjct: 115 FFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASS 174
Query: 681 S 683
+
Sbjct: 175 T 175
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 370 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 510
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 141 GKVEIIANDQGNRTTPSYVAFTDTERLI 224
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 236 QEPGGDDPNNTIFDA 280
G DP NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 150 EIIANDQGNRTTPSYVAFT-DTERL 221
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 367 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQK 546
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 547 MQ 552
Q
Sbjct: 714 SQ 715
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 111 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVS 290
T++ + H I+ N G +TP + T A + + MTPT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 291 SDVSSKMLLCKP 326
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 552 LHLLWLVFESH*STRNRDNCILHSFAKIS 466
++ LWL F + S+ + D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 258 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 160
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 230 CRQEPGGDDPNNTIFDAKRLIGRKFEDATVQADMKHWPFELS 355
C Q D N TI K L+ + ED ++HWP + S
Sbjct: 389 CLQICANSDGNLTITPVKTLVFKAAEDTKPSHHLRHWPQQSS 430
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 236 QEPGGDDPNNTIFDA 280
G DP N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 18 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 104
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 691 HPYHRGGIFEVKSTAATPT 747
HPYHRG F ST+A T
Sbjct: 1068 HPYHRGSQFSTVSTSAAST 1086
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 27.9 bits (59), Expect = 9.3
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Frame = +3
Query: 435 GAYENEG-NCRSLSWQNCAECSYHGSAYFNDSQRQAT--KDAGTISGLNVLRIINEPTAA 605
GA +N + SL W C + YHG + A AG S NV+R + P A
Sbjct: 512 GATQNANESLNSLVWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP-AG 570
Query: 606 AIAYGLDKKGTGERNVLIFDLGGGTSTCPSLPSRRYLRGEIHRGDT 743
G K T G G + SLP R RGE R D+
Sbjct: 571 HTQEGHPSKRT----------GSGFTNLTSLPQRMPRRGEGSRLDS 606
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 659 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 573
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,559,308
Number of Sequences: 59808
Number of extensions: 618716
Number of successful extensions: 1906
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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