Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20030
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 130 1e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 99 2e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 87 1e-17
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 79 4e-15
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 38 0.006
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 35 0.075
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.17
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 2.1
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 3.7
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 29 3.7
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 29 4.9
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 28 6.5
SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 8.6
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 8.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 130 bits (314), Expect = 1e-30
Identities = 63/143 (44%), Positives = 90/143 (62%)
Frame = +1
Query: 73 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCY 252
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 253 HIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 432
+DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 433 IVGVNKMDSTEPPYSEPRFEEIK 501
++ VNKMD ++E R+EEIK
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIK 308
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 99 bits (238), Expect = 2e-21
Identities = 50/88 (56%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 435
+DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREHA+L +LGV QLI
Sbjct: 18 MDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLI 77
Query: 436 VGVNKMDSTEPPY--SEPRFEEIKKEDP 513
V +NK+D Y +PR I +++P
Sbjct: 78 VAINKLDMVVLGYHRGKPR-SMIGRQEP 104
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +1
Query: 10 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 135
INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 79.0 bits (186), Expect = 4e-15
Identities = 40/60 (66%), Positives = 42/60 (70%)
Frame = +1
Query: 133 MGKGSFKYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQ 312
MGKGSFKYAWVLDKLKAERER + + IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Frame = +3
Query: 585 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPA 704
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPS 98
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 435
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 436 VGVNKMDSTEPPYSEPRFEEIKK 504
+ NK+D + ++ ++++I K
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILK 145
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 34.7 bits (76), Expect = 0.075
Identities = 26/110 (23%), Positives = 44/110 (40%)
Frame = +1
Query: 22 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERRY 201
+I H D+GK+T T L+ G I +EA + K D ++ ER+R
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 202 HNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 351
L +D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 33.5 bits (73), Expect = 0.17
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQEMGKGSFKYAWVLDKL 177
N+ VI HVD GKST T L+ K G I K +F K+ Q+ A L
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 178 KAERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 351
E + Y + + R L ID+PGH DF + D A+++V +G
Sbjct: 80 LPESDFEYITQPKDPKERG--FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 33.1 bits (72), Expect = 0.23
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Frame = +1
Query: 7 EINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLDK 174
+I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 112 DIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGFS 171
Query: 175 LKAERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTS--QADCAVLIVAAGT 348
E R L ID GH ++K I G + D A+L++A
Sbjct: 172 CTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGNA 231
Query: 349 G 351
G
Sbjct: 232 G 232
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 31.1 bits (67), Expect = 0.93
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 435
ID PGH F G + D VL+VAA G ++ ++ HA+ A LI
Sbjct: 81 IDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV----PLI 132
Query: 436 VGVNKMD 456
V +NK+D
Sbjct: 133 VAINKID 139
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 151 KYAWVLDKLKAERERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVL 330
+Y WV +K+ ER R Y YC + + L HI H+ + + Q +
Sbjct: 2381 EYVWVHNKMVHERSRPYRCEYCGWHLASKSNLTLHIKRI-HKRTQSDTLASELQKEPLET 2439
Query: 331 IVAAG--TGEFEAGISKNG 381
+V G T + G S +G
Sbjct: 2440 VVETGDQTSKMNDGKSTDG 2458
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 324 SAISLRGSCDH-VLDEISVSRSINVVT*YLLVSNFQ---RAISIVIPT-LTLSL*FVQYP 160
SAIS S + ++ ++ S +N+ + + N + S V PT +T S YP
Sbjct: 189 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTTSTSAVFPTTITPSPNITSYP 248
Query: 159 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 58
S+ + +F D T N TT V +T+
Sbjct: 249 SLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = -1
Query: 500 LISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEIPASNSPVPA 339
L+S N L ++E IL TPT + + K C + P + NSP+P+
Sbjct: 806 LLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGNSPIPS 865
Query: 338 AT 333
T
Sbjct: 866 GT 867
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 192
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 193 R 195
R
Sbjct: 1987 R 1987
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 7 EINIVVIGHVDSGKSTTTGHLIY 75
E+ + V+G+VD+GKST G L +
Sbjct: 229 EVRVAVVGNVDAGKSTLLGVLTH 251
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 629 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLDV*GSSFLISSNL 483
P+LEP + G L + S S GH+ D+ ++ LL+ ++ S L
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLNGIHEEMIVLSKL 426
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 28.7 bits (61), Expect = 4.9
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +1
Query: 13 NIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 186
NI V+GHVDSGK++ L DK + ++G SF+ A E
Sbjct: 37 NIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA------LPE 90
Query: 187 RERRYHNRYCSLEVRN*QVLCYHIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 366
R + + L++ +D PGH IK +I G A +I GT E G
Sbjct: 91 HLRSAGSEHDLLQMT-------LVDCPGHASLIKTIIGG------AQIIGECGT--IEGG 135
Query: 367 ISKNGQTR 390
++G+ +
Sbjct: 136 FGQSGKVK 143
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIV 336
ID PGH F G+S D A+L+V
Sbjct: 683 IDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = -1
Query: 599 RLQHVVSVPSRNGHESDSSWVVANLLDV*GSSFLISSNLGSLYGGSVESILFTPTMSCLT 420
+ + + + G + + S V+ N+LDV S+ SN S ++ ++LF+ + C +
Sbjct: 102 KCEWLTDIQDIKGRKLNMSLVLENILDVMQSNVTQPSNGASRNAQALSTVLFSCFVFCFS 161
Query: 419 PRVK 408
R+K
Sbjct: 162 LRLK 165
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 573 WHGDNMLEPSTKMPWFKGWQVERKE 647
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 324 SAISLRGSCDH-VLDEISVSRSINVVT*YLLVSNFQ---RAISIVIPT-LTLSL*FVQYP 160
SAIS S + ++ ++ S +N+ + + N + S V PT +T S YP
Sbjct: 501 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTTSTSAVFPTTITPSPNITSYP 560
Query: 159 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 58
S+ + +F D T N TT V +++
Sbjct: 561 SLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +1
Query: 256 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 435
+D PGH F G D +++VAA QT+E A GV +I
Sbjct: 143 LDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV-PII 194
Query: 436 VGVNKMD 456
+NK+D
Sbjct: 195 FAINKID 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,644,620
Number of Sequences: 59808
Number of extensions: 519815
Number of successful extensions: 1539
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -