Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20001
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 199 2e-51
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 161 4e-40
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 2e-30
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 125 4e-29
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 63 3e-10
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 1e-08
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 7e-04
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.99
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 30 2.3
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.0
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.3
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 28 7.0
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 28 7.0
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 9.2
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.2
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 199 bits (486), Expect = 2e-51
Identities = 117/204 (57%), Positives = 134/204 (65%), Gaps = 5/204 (2%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 252 MTPTTQYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVMEANLRSR*HIRVK--TKPFSP 419
M P + ++ + + K P + ++ V+ R + + K K F P
Sbjct: 61 MNP--ENTVFDAKRLIGRK--FDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFP 116
Query: 420 RKSVPWCXXXXXXXXXXIL-ANCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEP 596
+ L A + AYF+DSQRQATKDAGTI+GLNVLRIINEP
Sbjct: 117 EEISSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 597 TAAAIAYGLDKKGTGERNVLIFDL 668
TAAAIAYGLDKK ERNVLI+DL
Sbjct: 177 TAAAIAYGLDKKVGVERNVLIYDL 200
Score = 124 bits (300), Expect = 6e-29
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SS
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISS 121
Query: 434 MVLTKMKETAEAYLG 478
MVLTKMKETAEAYLG
Sbjct: 122 MVLTKMKETAEAYLG 136
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFDVS+LTIEDGIFEVKSTAGDT
Sbjct: 202 GGTFDVSVLTIEDGIFEVKSTAGDT 226
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 161 bits (392), Expect = 4e-40
Identities = 99/203 (48%), Positives = 123/203 (60%), Gaps = 10/203 (4%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMTPTT 266
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP-- 761
Query: 267 QYSMPNVSSDVSSKMLLCKPT*STGLSR------LSVMEANLRSR*HIRVK--TKPFSPR 422
N D +K L+ + T + V++ N + ++VK K F+
Sbjct: 762 ----ENTVFD--AKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAE 815
Query: 423 KSVPWCXXXXXXXXXXILA-NCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPT 599
+ L AYFND+QRQATKDAG I+GL V+RIINEPT
Sbjct: 816 EISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPT 875
Query: 600 AAAIAYGLDKKGTGERNVLIFDL 668
AAAIAYG+DKK GE+N+L+FDL
Sbjct: 876 AAAIAYGMDKK-EGEKNILVFDL 897
Score = 103 bits (248), Expect = 1e-22
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 434 MVLTKMKETAEAYLGK 481
MVLTKMKETAEAYLGK
Sbjct: 820 MVLTKMKETAEAYLGK 835
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFDVS+LTI++G+FEV +T GDT
Sbjct: 899 GGTFDVSLLTIDNGVFEVVATNGDT 923
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 130 bits (313), Expect = 2e-30
Identities = 59/64 (92%), Positives = 61/64 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 252 MTPT 263
M PT
Sbjct: 61 MNPT 64
Score = 102 bits (245), Expect = 3e-22
Identities = 57/100 (57%), Positives = 65/100 (65%), Gaps = 25/100 (25%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV-- 427
+P NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVN 121
Query: 428 -----------------------SSMVLTKMKETAEAYLG 478
SSMVL KMKETAEAYLG
Sbjct: 122 EAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLG 161
Score = 99.1 bits (236), Expect = 3e-21
Identities = 49/53 (92%), Positives = 49/53 (92%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 668
AYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDL
Sbjct: 241 AYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDL 293
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFDVS+L+IEDGIFEVKST GDT
Sbjct: 295 GGTFDVSVLSIEDGIFEVKSTHGDT 319
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 422 EVSSMVLTKMKETAEAYLG 478
++SSMVL KMKETAEAYLG
Sbjct: 211 QISSMVLNKMKETAEAYLG 229
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 510 AYFNDSQRQATKDAG 554
AYFNDSQRQATKDAG
Sbjct: 173 AYFNDSQRQATKDAG 187
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 125 bits (301), Expect = 4e-29
Identities = 56/76 (73%), Positives = 67/76 (88%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SS
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISS 121
Query: 434 MVLTKMKETAEAYLGK 481
MVL KMKETAEAYLG+
Sbjct: 122 MVLGKMKETAEAYLGQ 137
Score = 124 bits (300), Expect = 6e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +3
Query: 72 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 252 MTP 260
+ P
Sbjct: 61 LNP 63
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/53 (86%), Positives = 51/53 (96%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 668
AYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDL
Sbjct: 148 AYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDL 200
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/26 (88%), Positives = 25/26 (96%), Gaps = 1/26 (3%)
Frame = +2
Query: 671 GGTFDVSILTIEDG-IFEVKSTAGDT 745
GGTFDVSILTI+DG +FEVKSTAGDT
Sbjct: 202 GGTFDVSILTIDDGSLFEVKSTAGDT 227
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 62.9 bits (146), Expect = 3e-10
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMV 439
NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAML 180
Query: 440 LTKMKETAEAYL 475
T++K TAE L
Sbjct: 181 FTRLKTTAEIAL 192
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 245
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +3
Query: 489 ECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 659
+C +Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 660 FDL 668
D+
Sbjct: 258 VDI 260
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 62.9 bits (146), Expect = 3e-10
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 251
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 252 MTP 260
+ P
Sbjct: 90 INP 92
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 668
A F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DL
Sbjct: 178 AEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDL 229
Score = 48.0 bits (109), Expect = 8e-06
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 5/168 (2%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAYKGEDKTFFPEEVS 430
+P NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIG 150
Query: 431 SMVLTKMKETAEAYL----GKLCRMQLSRFRVLQ*LSKTSHKRCRYHLWLERSPNHQ*TD 598
V+ K++ AE L K + F + Q + T + + R N
Sbjct: 151 GYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQ-RNATVKAASLAGITVLRVINEPTAA 209
Query: 599 CCCDCLRS*QKGYWRTKCTYL*PRGGTFDVSILTIEDGIFEVKSTAGD 742
L ++G L GGT DVS+L I+ G+F + AG+
Sbjct: 210 ALAYGLHK-KEGVANVMVVDL--GGGTLDVSLLNIQGGMFVTMAMAGN 254
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 57.6 bits (133), Expect = 1e-08
Identities = 40/73 (54%), Positives = 44/73 (60%), Gaps = 26/73 (35%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIAY 617
A+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIAY
Sbjct: 47 AHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAY 106
Query: 618 GLDKK--GTGERN 650
GLDK G ERN
Sbjct: 107 GLDKARGGKAERN 119
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 377 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGK 481
I V GE ++F PE++S++VL ++K AEA+LG+
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQ 36
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFD+SIL I+ G+FEVK+T GDT
Sbjct: 9 GGTFDISILEIQKGVFEVKATNGDT 33
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Frame = +3
Query: 513 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLAA 674
+FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+ A
Sbjct: 115 FFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGA 172
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 141 GKVEIIANDQGNRTTPSYVAFTDTERLI 224
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 31.5 bits (68), Expect = 0.75
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 236 QEPGGDDPNNTIFDA 280
G DP NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 150 EIIANDQGNRTTPSYVAFT-DTERL 221
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 111 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVS 290
T++ + H I+ N G +TP + T A + + MTPT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 291 SDVSSKMLLCKP 326
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 258 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 160
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 59 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 235
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 236 QEPGGDDPNNTIFDA 280
G DP N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 230 CRQEPGGDDPNNTIFDAKRLIGRKFEDATVQADMKHWP 343
C Q D N TI K L+ + ED ++HWP
Sbjct: 389 CLQICANSDGNLTITPVKTLVFKAAEDTKPSHHLRHWP 426
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 18 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 104
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 465 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 286
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 285 RLASNIVL 262
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 552 LHLLWLVFESH*STRNRDNCILHSLPR*ASAVSFIFVSTMELTS 421
++ LWL F + S+ + D C+LHS+ A+ + VS EL S
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLANPLP---VSLNELLS 455
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 516 STRNRDNCILHSLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLIL--GLP 364
S N D+ +H R +S+VS V T L+ K+L + + TLI+ GLP
Sbjct: 108 SLNNSDSATVHK--RRSSSVSSHIVDTWRLSKDEAKILPTVIVGTLIIVFGLP 158
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 659 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 573
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 100 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 243
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,032,654
Number of Sequences: 59808
Number of extensions: 599146
Number of successful extensions: 2044
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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